search for: rmethodutil

...;missing") : 'length(x) = 4 > 1' in coercion to 'logical(1)' Error: unable to load R code in package 'oligo' is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the 'methods' package. Here's the patch: $ svn diff src/library/methods/R/RMethodUtils.R & [1] 1062 Index: src/library/methods/R/RMethodUtils.R =================================================================== --- src/library/methods/R/RMethodUtils.R (revision 76731) +++ src/library/methods/R/RMethodUtils.R (working copy) @@ -343,7 +343,7 @@ call. = TRUE, domain...

...cion to 'logical(1)' > > Error: unable to load R code in package 'oligo' > > > > is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the > > 'methods' package. Here's the patch: > > > > $ svn diff src/library/methods/R/RMethodUtils.R & > > [1] 1062 > > Index: src/library/methods/R/RMethodUtils.R > > =================================================================== > > --- src/library/methods/R/RMethodUtils.R (revision 76731) > > +++ src/library/methods/R/RMethodUtils.R (working copy) >...

...de in package 'oligo' > >> > > >> > is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the > >> > 'methods' package. Here's the patch: > >> > > >> > $ svn diff src/library/methods/R/RMethodUtils.R & > >> > [1] 1062 > >> > Index: src/library/methods/R/RMethodUtils.R > >> > =================================================================== > >> > --- src/library/methods/R/RMethodUtils.R (revision 76731) > >> &...

...h(x) = 4 > 1' in coercion to 'logical(1)' > Error: unable to load R code in package 'oligo' > > is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the > 'methods' package. Here's the patch: > > $ svn diff src/library/methods/R/RMethodUtils.R & > [1] 1062 > Index: src/library/methods/R/RMethodUtils.R > =================================================================== > --- src/library/methods/R/RMethodUtils.R (revision 76731) > +++ src/library/methods/R/RMethodUtils.R (working copy) > @@ -343,7 +343,7 @@ >...

...rror: unable to load R code in package 'oligo' >> > >> > is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the >> > 'methods' package. Here's the patch: >> > >> > $ svn diff src/library/methods/R/RMethodUtils.R & >> > [1] 1062 >> > Index: src/library/methods/R/RMethodUtils.R >> > =================================================================== >> > --- src/library/methods/R/RMethodUtils.R (revision 76731) >> > +++ src/library/metho...

...n 1:nmeths) { - .sigmat <- sigsList(methnms[i], where) + .sigmat <- sigsList(methnms[i], where=whereClass) for (j in seq_along(.sigmat)) { if (!all(is.na(match(.sigmat[[j]],clName)))) { methn.i <- escape(methnms[i]) Index: RMethodUtils.R =================================================================== --- RMethodUtils.R (revision 41719) +++ RMethodUtils.R (working copy) @@ -621,7 +621,7 @@ getMethodsMetaData <- ## get the methods meta-data for function f on database where function(f, where = topenv(parent....

...e 'oligo' >>>>>> >>>>>> is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the >>>>>> 'methods' package. Here's the patch: >>>>>> >>>>>> $ svn diff src/library/methods/R/RMethodUtils.R & >>>>>> [1] 1062 >>>>>> Index: src/library/methods/R/RMethodUtils.R >>>>>> =================================================================== >>>>>> --- src/library/methods/R/RMethodUtils.R (revision 76731) >>&gt...

...oad R code in package 'oligo' >>>>> >>>>> is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the >>>>> 'methods' package. Here's the patch: >>>>> >>>>> $ svn diff src/library/methods/R/RMethodUtils.R & >>>>> [1] 1062 >>>>> Index: src/library/methods/R/RMethodUtils.R >>>>> =================================================================== >>>>> --- src/library/methods/R/RMethodUtils.R (revision 76731) >>>>> +++ sr...

...t;>> >>>>>>> is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the >>>>>>> 'methods' package. Here's the patch: >>>>>>> >>>>>>> $ svn diff src/library/methods/R/RMethodUtils.R & >>>>>>> [1] 1062 >>>>>>> Index: src/library/methods/R/RMethodUtils.R >>>>>>> =================================================================== >>>>>>> --- src/library/methods/R/RMethodUtil...

...> omittedSig[omittedSig] <- (signature[omittedSig] != "missing") > > should do the trick. yes, (most probably). I've found a version of that which should be even easier to "read and understand", in svn commit 76753 : svn diff -c 76753 src/library/methods/R/RMethodUtils.R --- src/library/methods/R/RMethodUtils.R (Revision 76752) +++ src/library/methods/R/RMethodUtils.R (Revision 76753) @@ -342,8 +342,7 @@ gettextf("formal arguments (%s) omitted in the method definition cannot be in the signature", bad2), call. = TRUE, domain...

...> con <- dbConnect(dbDriver("MySQL"), dbname = "test") Error in dbConnect(dbDriver("MySQL"), dbname = "test") : couldn't find function ".valueClassTest" A dirty fix would be defining it by hand (from src/library/methods/R/RMethodUtils.R) : .valueClassTest <- function(object, classes, fname) { (...) } (Which works), but ideally it'd be nice determning why the function is not being defined on the first place.

> On 28 Jun 2019, at 16:03 , Martin Maechler <maechler at stat.math.ethz.ch> wrote: > >>>>>> Henrik Bengtsson >>>>>> on Thu, 27 Jun 2019 16:00:39 -0700 writes: > >> Using: >> >> untrace(methods::conformMethod) >> at <- c(12,4,3,2) >> str(body(methods::conformMethod)[[at]]) >> ## language omittedSig

...ure[omittedSig] != "missing") >> >> should do the trick. > yes, (most probably). I've found a version of that which should > be even easier to "read and understand", in svn commit 76753 : > svn diff -c 76753 src/library/methods/R/RMethodUtils.R > --- src/library/methods/R/RMethodUtils.R (Revision 76752) > +++ src/library/methods/R/RMethodUtils.R (Revision 76753) > @@ -342,8 +342,7 @@ > gettextf("formal arguments (%s) omitted in the method definition cannot be in the signature", bad2), > cal...

...quot;missing") ? ? >>> ? ? >>> should do the trick. ? ? >> yes, (most probably).? I've found a version of that which should ? ? >> be even easier to "read and understand", in? svn commit 76753 : ? ? >> svn diff -c 76753 src/library/methods/R/RMethodUtils.R ? ? >> --- src/library/methods/R/RMethodUtils.R??? (Revision 76752) ? ? >> +++ src/library/methods/R/RMethodUtils.R??? (Revision 76753) ? ? >> @@ -342,8 +342,7 @@ ? ? >> gettextf("formal arguments (%s) omitted in the method definition cannot be in the signature&quot...

Hi, namespaceImportFrom in base/R/namespace.R has the following: fdef <- methods:::getGeneric(genName, impenv) The definition of getGeneric is in methods/R/RMethodUtils.R starts with: getGeneric <- ## return the definition of the function named f as a generic. ## ## If there is no definition, throws an error or returns ## NULL according to the value of mustFind. function(f, mustFind = FALSE, where = .genEnv(f, topenv(parent.f...

...>>>>>>> is because of a '_R_CHECK_LENGTH_1_LOGIC2_=true' mistake in the > >>>>>>> 'methods' package. Here's the patch: > >>>>>>> > >>>>>>> $ svn diff src/library/methods/R/RMethodUtils.R & > >>>>>>> [1] 1062 > >>>>>>> Index: src/library/methods/R/RMethodUtils.R > >>>>>>> =================================================================== > >>>>>>> --- src/library/m...

..."missing") >>> >>> should do the trick. >> yes, (most probably). I've found a version of that which should >> be even easier to "read and understand", in svn commit 76753 : >> svn diff -c 76753 src/library/methods/R/RMethodUtils.R >> --- src/library/methods/R/RMethodUtils.R (Revision 76752) >> +++ src/library/methods/R/RMethodUtils.R (Revision 76753) >> @@ -342,8 +342,7 @@ >> gettextf("formal arguments (%s) omitted in the method definition cannot be in the signature", bad...

...quot;missing") >>> >>> should do the trick. >> yes, (most probably). I've found a version of that which should >> be even easier to "read and understand", in svn commit 76753 : >> svn diff -c 76753 src/library/methods/R/RMethodUtils.R >> --- src/library/methods/R/RMethodUtils.R (Revision 76752) >> +++ src/library/methods/R/RMethodUtils.R (Revision 76753) >> @@ -342,8 +342,7 @@ >> gettextf("formal arguments (%s) omitted in the method definition cannot be in the signature", bad...

...in the methods package uses the non-existent function packageName where I believe the function getPackageName was intended. For example: > getAllMethods("formula") Error in sprintf(gettext(fmt, domain = domain), ...) : could not find function "packageName" The patch to RMethodUtils.R is here: 238c238 < warning(gettextf("'%s' from '%s' is a non-generic function; no methods available", f, packageName(gwhere)), domain = NA) --- > warning(gettextf("'%s' from '%s' is a non-generic function; no methods ava...

>>>>> Michael Lawrence <lawrence.michael at gene.com> >>>>> on Mon, 26 Jan 2015 05:12:55 -0800 writes: > A isNamespaceLoaded() function would be a useful thing to > have in general if we are interested in readable code. An > efficient implementation would be just a bonus. Good point (readability), and thank you for the support! Note