search for: rmetasim

Hello, I am trying to do some simulation using the rmetasim package and I've run to this problem. --beginning of error msg-- Error in "[<-"(`*tmp*`, slice[l, ], slice[l, ], value = c(0.200000002980232, : number of items to replace is not a multiple of replacement length --end of error msg-- Here is the script I used. --script st...

.... The R version is 1.3.1. The gcc/g++ version is 2.95.3. I compile with R CMD INSTALL and my MAkevars file has the following lines: PKG_CXXFLAGS = -fPIC -I./ -I../../ PKG_CFLAGS = -fPIC -I./ -I../../ PKG_LIBS = -L/usr/local/lib The error I get when loading the library in R is: > library(rmetasim) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/usr/local/lib/R/library/rmetasim/libs/rmetasim.so": /usr/local/lib/R/library/rmetasim/libs/rmetasim.so: Undefined symbol "Rf_unprotect__Fi" Error in library(rmetasim) : .First....

I realized that the script I included in my original post (see below) was written for an older version of rmetasim and will not work with the current version. The only change that need be made to get my script to run with the latest release of rmetasim is to change the command 'simulate.landscape()' to 'sim.landscape()'. My apologies to anyone who tried to use my script and ran into proble...

Dear R user: Now I am studying "matrix population models" and Rmetasim package,but I find it's very difficult to understand this model fully and can't find a good teacher.My question is that:Now I do some research about one marine shrimp: Penaeus chinensis, it's life cycle is one year. after it breed it's offsprings, it will died. This shrimp's lif...

I'm trying to use a contributed package (rmetasim) to generate simulated genetic datasets. My scripts work fine when I run them on a Sun workstation running Solaris 7 and when I run them on a ~4 year old laptop PC that I have. However, when I run them on my new laptop (Dell Latitude D410 purchased in August 2005), the simulation will run for...

I want to speed up computations (involving matrices) by writing some C-code to be loaded. In the C-code, I need to invert matrices etc. As I've understood the "writing R extensions" doc, I can use use #include <R_ext/Linpack.h> in my .c-file and get access to linpack's facilities within my C-code. Is that correct? If so, can anyone point me to examples on how this is

Hello, I am having really hard time finding a good article about simulating genotypes of cases and controls at a disease locus using R. if you guys can point me or guide me where i can find more information, it will be helpful. thanks, Claire -- View this message in context: http://www.nabble.com/genotypes-simulation-tp17065607p17065607.html Sent from the R help mailing list archive at

Hello to everyone! I have built CRAN task view for genetics. For now I have not submit it to CRAN yet and it can be accessible from: http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.html http://www.bfro.uni-lj.si/MR/ggorjan/software/R/Genetics.ctv I have not submitted it to CRAN, since I would like first some opinion about it. Genetics is really so broad field that I belive one person

...One common error message is An integer constant expression is required within the array subscript operator. Here is an example: double data[(*nrow)+2*env][(*ncol)+2*env]; This affects at least packages GammaTest MCMCpack MasterBayes clusterSim dprep edci epsi knnFinder pbatR rmetasim zicounts 2) Including C header files is fraught with difficulties. Unfortunately that includes the R header files, because they in turn include system C headers. The checking of which features were available was done using the C compiler with particular flags, and glibc has a habit of hiding...

...uot;,"resper","RFA","Rfwdmv","rgdal","rgenoud","rgl","RGraphics","RII","rimage","riv","rJava","Rlab","rlecuyer","RLMM","Rmdr","rmeta","rmetasim","roblm","robustbase","ROCR","RODBC","Rpad","rpart","rqmcmb2","RQuantLib","rrcov","rrp","RSQLite","rstream","RSvgDevice","rtiff","RUnit","r...

CRAN (and crantastic) updates this week New packages ------------ * bdoc (1.0) Michael Anderson http://crantastic.org/packages/bdoc This package contains a function that will classify DNA barcodes as well as a few test and reference data sets. * bdsmatrix (1.0) Terry Therneau http://crantastic.org/packages/bdsmatrix This is a special case of sparse matrices, used by coxme and

...(1.0-5), rcom (2.2-3), Rcpp (0.8.4), RcppArmadillo (0.2.3), RCurl (1.4-2), relsurv (1.6), rEMM (1.0-0), RExcelInstaller (3.1-5), RFinanceYJ (0.1.0), RFLPtools (1.2), rgdal (0.6-27), rgenoud (5.6-7), rgl (0.91), Rhh (1.0.1), RHRV (2.4), rjags (2.1.0-5), rJava (0.8-4), rjson (0.1.9), RLRsim (2.0-5), rmetasim (1.1.12), rms (3.0-0), RNetCDF (1.2-1.1), robCompositions (1.4.2), robfilter (2.6.1), robust (0.3-11), rpartOrdinal (2.0.2), RPPanalyzer (1.0.3), rpvm (1.0-4), rrcov (1.0-01), RSAGA (0.9-7), Rserve (0.6-1), RSiena (1.0.11.110), Rsolnp (1.0-4), RSQLite (0.9-1), rstream (1.2.5), Rsymphony (0.1-11), r...