search for: rma_common

...do_PLMrma.o do_PLMthreestep.o idealmismatch.o LESN.o lm.o lm_threestep.o log_avg.o matrix_functions.o median_logPM.o medianPM.o medianpolish.o nthLargestPM.o PLM_modelmatrix.o preprocess.o psi_fns.o qnorm.o qnorm_probeset.o rlm_anova.o rlm.o rlm_PLM.o rlm_se.o rlm_threestep.o rma_background2.o rma_common.o rma_PLM.o rmaPLM_pseudo.o SCAB.o scaling.o threestep.o threestep_common.o threestep_PLM.o threestep_summary.o threestep_summary_methods.o transfns.o weightedkerneldensity.o -L/usr/lib64/R/lib -lRlapack -lblas -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit...

Hi!I'm doing a little data importing from .cel files, > setwd("/home/mandova/celfiles") > mydata<-ReadAffy() Error in sub("^/?([^/]*/)*", "", filenames, extended = TRUE) : unused argument(s) (extended = TRUE) Then I tried > filenames<-paste("GSM",c(seq(138597,138617,1)),".cel",sep="") >

...I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c rma2.c -o rma2.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c rma_background2.c -o rma_background2.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c rma_common.c -o rma_common.o gcc -shared -o affy.so chipbackground.o getall_locations.o mas5calls.o qnorm.o rma2.o rma_background2.o rma_common.o -L/usr/lib/R/lib -lR ** R ** data ** demo ** inst ** save image Loading required package: Biobase Loading required package: tools Welcome to Bioconductor V...

I always followed http://cran.r-project.org/bin/linux/ubuntu/ to install R on Ubuntu 8.1. I had no errors before! > install.packages("XML") Warning in install.packages("XML") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL