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...ugrrants - texmex Some of these fail with the environment set to 'error' but not to 'none', so they are getting a value from somewhere else that may or may not be right. Affected as revdeps of optmatch: - cobalt - htetree - jointVIP - MatchIt - PCAmatchR - rcbalance - rcbsubset - RItools - stratamatch Affected as revdeps of texmex: - lax - mobirep Best, luke -- Luke Tierney Ralph E. Wareham Professor of Mathematical Sciences University of Iowa Phone: 319-335-3386 Department of Statistics and Fax: 319-335-3017 Actuarial Sc...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })