search for: rf_eval

...ntdll.dll:7C911E58 RtlInitializeCriticalSection 7C910D5C ntdll.dll:7C910D5C wcsncpy 77C2C2DE msvcrt.dll:77C2C2DE free 1004BFB0 R.dll:1004BFB0 do_isseekable 1004C051 R.dll:1004C051 con_close 1004D33E R.dll:1004D33E do_close 100A8E41 R.dll:100A8E41 do_internal 1008494A R.dll:1008494A Rf_eval 10085595 R.dll:10085595 Rf_evalList 10084993 R.dll:10084993 Rf_eval 100875AB R.dll:100875AB Rf_applyClosure 100A9361 R.dll:100A9361 do_internal 100A99A5 R.dll:100A99A5 Rf_usemethod 100A9E1A R.dll:100A9E1A do_usemethod 1008494A R.dll:1008494A Rf_eval 100875AB R.dll:100875AB Rf_applyC...

...fRawInputProc 77D145BD USER32.dll:77D145BD TranslateMessageEx 77D147D4 USER32.dll:77D147D4 DefWindowProcA 77F65DA3 ntdll.dll:77F65DA3 KiUserCallbackDispatcher 005B602F R.dll:005B602F show 00477CD5 R.dll:00477CD5 do_selectlist 00509CB4 R.dll:00509CB4 do_internal 004DA9E8 R.dll:004DA9E8 Rf_eval 004DACD5 R.dll:004DACD5 Rf_applyClosure 004DA7F7 R.dll:004DA7F7 Rf_eval 004DA716 R.dll:004DA716 Rf_eval 004DA65E R.dll:004DA65E Rf_eval 004DCBBB R.dll:004DCBBB Rf_evalList 004DA910 R.dll:004DA910 Rf_eval 004DCBBB R.dll:004DCBBB Rf_evalList 004DA910 R.dll:004DA910 Rf_eval 004DB75C R...

...Exception: EXC_BAD_ACCESS (0x0001) Codes: KERN_INVALID_ADDRESS (0x0001) at 0x7c1d0010 Thread 0 Crashed: #0 0x0149995c in Rf_install (names.c:1024) #1 0x00fe3cc0 in R_initMethodDispatch (methods_list_dispatch.c:92) #2 0x00043d04 in do_dotCode (dotcode.c:1311) #3 0x00057188 in Rf_eval (eval.c:441) #4 0x00057614 in Rf_applyClosure (eval.c:609) #5 0x00057200 in Rf_eval (eval.c:453) #6 0x00058810 in do_begin (eval.c:1055) #7 0x00056fcc in Rf_eval (eval.c:418) #8 0x00057614 in Rf_applyClosure (eval.c:609) #9 0x00057200 in Rf_eval (eval.c:453) #10 0x00056fc...

...ernet.c:320 #7 0x010b6290 in do_download (call=0x18d0078, op=0x181c2a8, args=0x18c3b50, env=0x18cfd64) at ../../../../R-2.3.0/src/main/internet.c:99 #8 0x010cefc4 in do_internal (call=0x18c3b50, op=0xbfff2a03, args=0x0, env=0x18cfd64) at ../../../../R-2.3.0/src/main/names.c:1089 #9 0x0109d798 in Rf_eval (e=0x18d0040, rho=0x18cfd64) at ../../../../R-2.3.0/src/main/eval.c:391 #10 0x0109f87c in do_set (call=0x18d17b0, op=0x180a190, args=0x18d0008, rho=0x18cfd64) at ../../../../R-2.3.0/src/main/eval.c:1303 #11 0x0109d798 in Rf_eval (e=0x18d17b0, rho=0x18cfd64) at ../../../../R-2.3.0/src/main/eval.c:39...

...ntation fault and the console tells me Thread 0 Crashed: #0 0x0185095c in Rf_install (names.c:1024) #1 0x01827d64 in R_execMethod (eval.c:721) #2 0x013d6c38 in R_standardGeneric (methods_list_dispatch.c:630) #3 0x00082d60 in do_standardGeneric (objects.c:1013) #4 0x00057188 in Rf_eval (eval.c:441) #5 0x00058f40 in do_set (eval.c:1281) #6 0x00056fcc in Rf_eval (eval.c:418) #7 0x00058810 in do_begin (eval.c:1055) #8 0x00056fcc in Rf_eval (eval.c:418) #9 0x00057614 in Rf_applyClosure (eval.c:609) #10 0x00057200 in Rf_eval (eval.c:453) #11 0x00058810 in do_...

...us=0xbfffcd68) at /ext/R/cvs/R-devel/src/main/gram.y:1083 #9 0x081175d1 in do_parse (call=0x883d674, op=0x8205024, args=0x8839138, env=0x9207e84) at source.c:76 #10 0x080c99e4 in do_internal (call=0x883d5e8, op=0x81fb5e8, args=0x92088bc, env=0x9207e84) at names.c:1056 #11 0x080a3b28 in Rf_eval (e=0x883d5e8, rho=0x9207e84) at eval.c:418 #12 0x080a4f62 in do_begin (call=0x883cdc4, op=0x81fba9c, args=0x883d5cc, rho=0x9207e84) at eval.c:1072 #13 0x080a3b28 in Rf_eval (e=0x883cdc4, rho=0x9207e84) at eval.c:418 #14 0x080a3db2 in Rf_applyClosure (call=0x8954ae0, op=0x883d4ec, arglist=0x...

...fe0 esi=00000000 edi=003e3d08 eip=77c13730 esp=0022d5ac ebp=0022d7f8 iopl=0 nv up ei pl zr na po nc cs=001b ss=0023 ds=0023 es=0023 fs=0038 gs=0000 efl=00000246 Call stack: 77C13730 msvcrt.dll:77C13730 strlen 004C799D R.dll:004C799D do_dotcall 004DA35F R.dll:004DA35F Rf_eval 004DC2D5 R.dll:004DC2D5 do_set 004DA3C8 R.dll:004DA3C8 Rf_eval 004DBA52 R.dll:004DBA52 do_begin 004DA3C8 R.dll:004DA3C8 Rf_eval 004DA6B5 R.dll:004DA6B5 Rf_applyClosure 004DA1D7 R.dll:004DA1D7 Rf_eval 004DA949 R.dll:004DA949 Rf_applyClosure 004DAC5A R.dll:004DAC5A R_execMethod 10DA2B...

...bfffbf40, cdr=0x81f65a0) at memory.c:1534 #3 0x08097e35 in Rf_duplicate (s=0x8324ff0) at duplicate.c:108 #4 0x080c9abf in GetObject (cptr=0xbfffc2d0) at objects.c:40 #5 0x080ca663 in do_usemethod (call=0x82c5d28, op=0x8209874, args=0x82c5d44, env=0x8f1ecd4) at objects.c:401 #6 0x080a3b28 in Rf_eval (e=0x82c5d28, rho=0x8f1ecd4) at eval.c:418 #7 0x080a3db2 in Rf_applyClosure (call=0x8324ff0, op=0x82c5c48, arglist=0x8d05e80, rho=0x8f385f0, suppliedenv=0x81f65a0) at eval.c:609 #8 0x080a3937 in Rf_eval (e=0x8324ff0, rho=0x8f385f0) at eval.c:453 #9 0x080a586b in Rf_evalList (el=0x8324f9c, rh...

...348d)[0x7fb437472e2d] /lib/libc.so.6(__vsprintf_chk+0x99)[0x7fb4375265b9] /lib/libc.so.6(__sprintf_chk+0x80)[0x7fb437526500] /home/jbiztino/R/x86_64-pc-linux-gnu-library/2.10/RMySQL/libs/RMySQL.so(RS_MySQL_exec+0x1be)[0x7fb4348630de] /usr/lib64/R/lib/libR.so[0x7fb437847ace] /usr/lib64/R/lib/libR.so(Rf_eval+0x6b6)[0x7fb437877ed6] /usr/lib64/R/lib/libR.so[0x7fb43787a0e0] /usr/lib64/R/lib/libR.so(Rf_eval+0x46e)[0x7fb437877c8e] /usr/lib64/R/lib/libR.so[0x7fb43787a1ce] /usr/lib64/R/lib/libR.so(Rf_eval+0x46e)[0x7fb437877c8e] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x2d3)[0x7fb43787ba93] /usr/lib64/R/lib/l...

...0 zhetd2_ + 960 3 libRlapack.dylib 0x0136fcdc zhetrd_ + 1900 4 libRlapack.dylib 0x01370ad8 zheev_ + 1016 5 lapack.so 0x010a4038 modLa_rs_cmplx + 392 6 libR.dylib 0x003c99e8 La_rs_cmplx + 72 7 libR.dylib 0x00372380 do_dotcall + 16864 8 libR.dylib 0x003a170c Rf_eval + 1804 9 libR.dylib 0x003a14dc Rf_eval + 1244 10 libR.dylib 0x003a45f4 do_set + 980 11 libR.dylib 0x003a14dc Rf_eval + 1244 12 libR.dylib 0x003a2b08 do_begin + 104 13 libR.dylib 0x003a14dc Rf_eval + 1244 14 libR.dylib 0x003a14dc Rf_eval + 1244 15 li...

...== by 0x80C1617: R_HashSet (envir.c:219) ==11423== by 0x80C2CC1: Rf_defineVar (envir.c:1261) ==11423== by 0x814F6BE: RestoreToEnv (saveload.c:2043) ==11423== by 0x8150465: do_loadFromConn2 (saveload.c:2358) ==11423== by 0x80F95FF: do_internal (names.c:1097) ==11423== by 0x80CB320: Rf_eval (eval.c:431) ==11423== by 0x80CCAC1: do_begin (eval.c:1107) ==11423== by 0x80CB320: Rf_eval (eval.c:431) ==11423== by 0x80CB5E0: Rf_applyClosure (eval.c:614) ==11423== by 0x80CB1B7: Rf_eval (eval.c:455) ==11423== by 0x80CCAC1: do_begin (eval.c:1107) ==11423== Address 0x473D163 is 3...

Hi All, Well I finally have found the time to get svn working and I have successfully built my own tuned atlas (multi-threaded version) libs and have both the r-devel and r-patched trees building daily on my box. The problem is I still do not have a good idea of the layout and design of R, and typically I "learn by doing" by trying to fix a bug that hits me. Unfortunately ;-)

If anyone has a few extra CPU cycles to spare, I'd appreciate it if you could verify a problem that I have encountered. Run the code below and tell me if it crashes your R before completion. library(lme4) data(bdf) dump<-sapply( 1:50000, function(i) { fm <- lme(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen, data = bdf, random = ~ IQ.ver.cen | schoolNR); cat("

...efl=00000206 # # Call stack: # 004D2A04 R.dll:004D2A04 malloc # 0054FEFA R.dll:0054FEFA Rf_allocVector # 0051AA10 R.dll:0051AA10 call_S # 0051ABB7 R.dll:0051ABB7 call_S # 0051AF18 R.dll:0051AF18 do_int_unzip # 00559594 R.dll:00559594 do_internal # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052BA52 R.dll:0052BA52 do_begin # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052BA52 R.dll:0052BA52 do_begin # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052BA52 R.dll:0052BA52 do_begin # 0052A3C8 R.dll:0052A3C8 Rf_eval # 0052A6...

...:1551 #1 0x5561c in Rf_duplicate (s=0xbcd6f0) at duplicate.c:140 #2 0x55518 in Rf_duplicate (s=0x99c508) at duplicate.c:133 #3 0x55518 in Rf_duplicate (s=0xc63468) at duplicate.c:133 #4 0x5b958 in do_set (call=0xb72804, op=0x1c6304, args=0xb727cc, rho=0x499a38) at eval.c:1012 #5 0x5a114 in Rf_eval (e=0xb72804, rho=0x499a38) at eval.c:317 #6 0x5b300 in do_begin (call=0xb739ac, op=0x1c6294, args=0xb72820, rho=0x499a38) at eval.c:803 #7 0x5a114 in Rf_eval (e=0xb739ac, rho=0x499a38) at eval.c:317 #8 0x5a730 in Rf_applyClosure (call=0x49a264, op=0x904f24, arglist=0x4bb21c, rho=0x4bb3c0...

...=0xbfffcdf8) at /ext/R/cvs/R-devel/src/main/gram.y:1147 #10 0x08117b61 in do_parse (call=0x883dc90, op=0x8205704, args=0x88397c0, env=0x94f5cf0) at source.c:76 #11 0x080c9e24 in do_internal (call=0x883dc04, op=0x81fbcc8, args=0x94f52d4, env=0x94f5cf0) at names.c:1056 #12 0x080a3d18 in Rf_eval (e=0x883dc04, rho=0x94f5cf0) at eval.c:418 #13 0x080a5172 in do_begin (call=0x883d3e0, op=0x81fc17c, args=0x883dbe8, rho=0x94f5cf0) at eval.c:1072 #14 0x080a3d18 in Rf_eval (e=0x883d3e0, rho=0x94f5cf0) at eval.c:418 #15 0x080a3fa5 in Rf_applyClosure (call=0x8955188, op=0x883db08, arglist=...

...nal SIGBUS, Bus error. bcEval (body=body at entry=0x857990, rho=rho at entry=0x17f3d798, useCache=useCache at entry=TRUE) at eval.c:5873 5873 { (gdb) bt #0 bcEval (body=body at entry=0x857990, rho=rho at entry=0x17f3d798, useCache=useCache at entry=TRUE) at eval.c:5873 #1 0x00007ffff78d4138 in Rf_eval (e=0x857990, rho=rho at entry=0x17f3d798) at eval.c:624 #2 0x00007ffff78d61af in R_execClosure (call=call at entry=0x6079c0, newrho=<optimized out>, sysparent=<optimized out>, rho=rho at entry=0x17f3d450, arglist=arglist at entry=0x0, op=op at entry=0x857a70) at eval.c:1614 #3 0x0...

I have an R script that I run using nohup R CMD BATCH r.in r.out & The code loops through data from the database and takes hours. The problem is, in about an hour and a half after I start the script the program stops and I get /usr/lib/R/bin/BATCH: line 55: 14067 Done ( echo "invisible(options(echo = TRUE))"; cat ${in}; echo "proc.time()" ) 14068

...ueue 1 User stack: 19 start + 52 (in R) [0x100001a74] 19 main + 844 (in R) [0x100001dec] 19 -[REngine runREPL] + 102 (in R) [0x100010f86] 19 run_REngineRmainloop + 192 (in R) [0x1000194a0] 19 R_ReplDLLdo1 + 462 (in libR.dylib) [0x10016ce4e] 19 Rf_eval + 1196 (in libR.dylib) [0x10013ca1c] 19 do_for + 678 (in libR.dylib) [0x100140f66] 19 Rf_eval + 1196 (in libR.dylib) [0x10013ca1c] 19 do_begin + 308 (in libR.dylib) [0x100141724] 19 Rf_eval + 1196 (in libR.dylib) [0x10013ca...

...ctorILi19ENS_15PreserveStorageEEENS0_ILi16ES1_EE+0x1e2)[0x7f7738566582] /usr/local/lib64/R /library/sf/libs/sf.so(_sf_CPL_transform+0x72)[0x7f7738556472] /usr/local/lib64/R/lib/libR.so(+0xf58ed)[0x7f774d97f8ed] /usr/local/lib64/R/lib/libR.so(+0x131b36)[0x7f774d9bbb36] /usr/local/lib64/R/lib/libR.so(Rf_eval+0x348)[0x7f774d9caf78] /usr/local/lib64/R/lib/libR.so(+0x14256b)[0x7f774d9cc56b] /usr/local/lib64/R/lib/libR.so(+0x136e17)[0x7f774d9c0e17] /usr/local/lib64/R/lib/libR.so(Rf_eval+0x348)[0x7f774d9caf78] /usr/local/lib64/R/lib/libR.so(+0x1416c6)[0x7f774d9cb6c6] /usr/local/lib64/R/lib/libR.so(+0x13d89c...