Displaying 4 results from an estimated 4 matches for "returndata".
2017 Nov 02
3
ggplot inside function doesn't plot
I have a function:
myplot <- function (X) {
d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE)
png(paste("img/", X, ".png", sep=""))
ggplot(d, aes(x=condition, y=count, color=condition)) +
geom_point(position=position_jitter(w=0.1,h=0)) +
scale_y_log10(breaks=c(25,100,400)) +
ggtitle(X) +
theme(plot.title = element_t...
2017 Nov 02
3
ggplot inside function doesn't plot
...insemius <dwinsemius at comcast.net> wrote:
>
>> On Nov 2, 2017, at 9:27 AM, Ed Siefker <ebs15242 at gmail.com> wrote:
>>
>> I have a function:
>>
>> myplot <- function (X) {
>> d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE)
>> png(paste("img/", X, ".png", sep=""))
>> ggplot(d, aes(x=condition, y=count, color=condition)) +
>> geom_point(position=position_jitter(w=0.1,h=0)) +
>> scale_y_log10(breaks=c(25,100,400)) +
>> ggtitle(X...
2017 Nov 02
0
ggplot inside function doesn't plot
> On Nov 2, 2017, at 9:27 AM, Ed Siefker <ebs15242 at gmail.com> wrote:
>
> I have a function:
>
> myplot <- function (X) {
> d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE)
> png(paste("img/", X, ".png", sep=""))
> ggplot(d, aes(x=condition, y=count, color=condition)) +
> geom_point(position=position_jitter(w=0.1,h=0)) +
> scale_y_log10(breaks=c(25,100,400)) +
> ggtitle(X) +
> them...
2009 Jan 15
2
problems with extractPrediction in package caret
...to evaluate my model and make predictions on a test dataset. I tried to follow the instructions in the manual and the vignettes but unfortunately I´m getting an error message I can`t figure out.
Here is my code:
rfControl <- trainControl(method = "oob", returnResamp = "all", returnData=TRUE, verboseIter = TRUE)
rftrain <- train(x=train_x, y=trainclass, method="rf", tuneGrid=tuneGrid, tr.control=rfControl)
pred <- predict(rftrain)
pred # this works fine
expred <- extractPrediction(rftrain)
Error in models[[1]]$trainingData :
$ operator is invalid for atomi...