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2006 Apr 07
1
creating files using for loop
...ing the loop to name some files as I would like. Here is a
sketch of my code:
sub.dataset <- c(101, 201)
#Assume I only have two subsets which I call 101 and 201
for (i in 1:length(sub.dataset)) {
#Estimation commands here...unimportant for this question
#Estimates <- matrix of estimation resultsI will write out to LaTeX
latex(Estimates, file=sub.dataset[i].tex)
}
So, the latex command is what's problematic here. How can I get my
for loop to put file='101.tex' and file='201.tex' (or many similar
things) where I want it to. I could just as easily want to put
something l...
2007 Jul 30
0
problems in limma
...plain-PLAIN plateau-PLATEAU PLATEAU-PLAIN
plain 1 0 0
plateau 0 1 0
PLATEAU 0 -1 1
> fit2MA.pi<-contrasts.fit(fitMA.pi,contrast.matrix)
> fit2MA.pi<-eBayes(fit2MA.pi)
> resultsi.001.fc2=decideTests(fit2MA.pi,method="nestedF",adjust.method="BH",p.value=0.001,lfc=log2(2))
write.fit(fit2MA.pi,
results=decideTests(fit2MA.pi,method="nestedF",adjust.method="BH",p.value=0.001,lfc=1),
"fit2MA.pi.nestedF.adj_BH.P_001.FC_2.csv", digi...