search for: repeatdly

Hello, I was simply doing a graph, but an error repeatdly occurs. Any idea why? (this only happens in the latest R version, I am a windows user). Thank you, Marta library(Hmisc) > example(xYplot) xYplot> d <- expand.grid(x = seq(0, 2 * pi, length = 150), p = 1:3, shift = c(0, pi)) xYplot> xYplot(sin(x + shift)^p ~ x | shift, groups =...

Hello All! I'm a new R user, with no much experience. I have a R script (downloaded from internet) which has user interaction using "readline()" function. So as I have to run it repeatdly (with some different options) I was planning to do it on a BATCH mode. Is there any way to answer the "readline()" questions from a batch file? How do I do that? I'm using R under Linux. Thanks, Jose -- View this message in context: http://r.789695.n4.nabble.com/R-script-in-batch...

...uot;,"g","h","i","k","l","n","q","r" instead of the conventional nucleotide codes). My intention is to calculate the ratematrix (which is a 12x12 matrix) for this special aligment with ape and phangorn, however I've repeatdly fail to do it. The aligment is in a phyDat object containing 30 sequences and 12 states (by using "user-defined" character states consisting on the 12 letters indicated above). I follow the steps described in the phangorn-specials vignette but the ratematrix (under a GTR substitution mode...