search for: refgene

Displaying 4 results from an estimated 4 matches for "refgene".

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2017 Aug 25
1
splitting a dataframe in R based on multiple gene names in a specific column
...re masked from 'package:stats': #> #> filter, lag #> The following objects are masked from 'package:base': #> #> intersect, setdiff, setequal, union library(purrr) library(tidyr) df.sample.gene<-read.table( text="Chr Start End Ref Alt Func.refGene Gene.refGene 284 chr2 16080996 16080996 C T ncRNA_exonic GACAT3 448 chr2 113979920 113979920 C T ncRNA_exonic LINC01191,LOC100499194 465 chr2 131279347 131279347 C G ncRNA_exonic LOC440910 525 chr2 223777758 223777758 T A exonic AP1S3 626 chr3 99794575 99794...
2017 Aug 22
2
splitting a dataframe in R based on multiple gene names in a specific column
I would appreciate please a suggestion on how to do the following : i'm working with a dataframe in R that contains in a specific column multiple gene names, eg : > df.sample.gene[15:20,2:8] Chr Start End Ref Alt Func.refGene Gene.refGene284 chr2 16080996 16080996 C T ncRNA_exonic GACAT3448 chr2 113979920 113979920 C T ncRNA_exonic LINC01191,LOC100499194465 chr2 131279347 131279347 C G ncRNA_exonic LOC440910525 chr2 223777758 223777758 T A exonic AP1S3626 chr3...
2017 Aug 23
0
splitting a dataframe in R based on multiple gene names in a specific column
Hi Bogdan, Messy, and very specific to your problem: df.sample.gene<-read.table( text="Chr Start End Ref Alt Func.refGene Gene.refGene 284 chr2 16080996 16080996 C T ncRNA_exonic GACAT3 448 chr2 113979920 113979920 C T ncRNA_exonic LINC01191,LOC100499194 465 chr2 131279347 131279347 C G ncRNA_exonic LOC440910 525 chr2 223777758 223777758 T A exonic AP1S3 626 chr3 99794575 99794575...
2009 Mar 19
1
zip.file.extract
Hello everyone, Can anyone give me some hint/suggestion for unzipping a file in R? The help file for "zip.file.extract" function seems to be difficult to understand. For example, the name of my zip file is "refGene.txt.gz", which is located in "C:\Documents and Settings\Desktop\test1". I would like to unzip this file to the same directory. Here's the syntax from the help file, zip.file.extract(file, zipname = "R.zip", unzip = getOption("unzip")) What I should...