Displaying 1 result from an estimated 1 matches for "readalignedseq".
2010 Oct 01
1
[Help]:How to use "loop" to achieve this aim?
Hello, Everyone,
how to use "loop" to make the process automatic and fast?
When compute each sample, the script type in R almost the same, just the
input and output file's name is changed(chr1 change to chr2, chr3,chr4...).
The first sample's script like this:
>chr1=MEDIPS.readAlignedSeqences(BSgenome="hg19", file="chr1",numrows= )
>chr1=MEDIPS.genomeVector(data=chr1, bin_size=50,extend=250)
...
...
>write.table(frameschr1.frame500.step250, file="frames.chr1.meth.txt",
sep="\T", quote=F, col.names=T, row.names=F)
The second sample'...