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2017 Sep 02
1
readLines() segfaults on large file & question on how to work around
Thank you for your suggestion. Unfortunately, while R doesn't segfault calling readr::read_file() on the test file I described, I get the error message: Error in read_file_(ds, locale) : negative length vectors are not allowed Jen On Sat, Sep 2, 2017 at 1:38 PM, Ista Zahn <istazahn at gmail.com> wrote: > As s work-around I suggest readr::read_file. > > --Ista > > > On Sep 2, 2017 2:58 PM, "Jennifer Lyon" <jennifer.s.lyon at gma...
2017 Sep 03
2
readLines() segfaults on large file & question on how to work around
Jeroen: Thank you for pointing me to ndjson, which I had not heard of and is exactly my case. My experience: jsonlite::stream_in - segfaults ndjson::stream_in - my fault, I am running Ubuntu 14.04 and it is too old so it won't compile the package corpus::read_ndjson - works!!! Of course it does a different simplification than jsonlite::fromJSON, so I have to change some code, but
2017 Sep 04
0
readLines() segfaults on large file & question on how to work around
...t;) } close(con) # Causes segfault: readLines("test.txt") Also the error reported by readr is also reproduced (a more informative error message and checking for integer overflows would be nice). I will report this with readr. library(readr) read_file("test.txt") # Error in read_file_(ds, locale) : negative length vectors are not # allowed -- Jan > sessionInfo() R version 3.4.1 (2017-06-30) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 17.04 Matrix products: default BLAS: /usr/lib/libblas/libblas.so.3.7.0 LAPACK: /usr/lib/lapack/liblapack.so.3.7.0...
2017 Sep 02
5
readLines() segfaults on large file & question on how to work around
Hi: I have a 2.1GB JSON file. Typically I use readLines() and jsonlite:fromJSON() to extract data from a JSON file. When I try and read in this file using readLines() R segfaults. I believe the two salient issues with this file are 1). Its size 2). It is a single line (no line breaks) I can reproduce this issue as follows #Generate a big file with no line breaks # In R >