Displaying 3 results from an estimated 3 matches for "read_abatch".
2006 Nov 11
1
Install bioconductor
...e 'affyio' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... no
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2
-std=gnu99 -c read_abatch.c -o read_abatch.o
read_abatch.c:151:18: error: zlib.h: Aucun fichier ou r?pertoire de ce type
read_abatch.c:1244: error: expected declaration specifiers or '...' before
'gzFile'
read_abatch.c: In function 'ReadgzFileLine':
read_abatch.c:1245: warning: implicit declaration o...
2008 Mar 29
1
Problem installing aroma.affymetrix on Solaris 9 with R-2.6.2
...** libs
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include -I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c fread_functions.c -o fread_functions.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include -I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_abatch.c -o read_abatch.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include -I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_bpmap.c -o read_bpmap.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include -I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c...
2010 May 08
1
memory limit
Hi,
when I try to import a microarray CEL batch, I get this error message:
> myAB <- ReadAffy ()
Error in .Call("read_abatch", filenames, rm.mask, rm.outliers, rm.extra, :
cannot allocate vector of length 1287151200
which, assuming the value is in bites, is below my RAM values (3 Gb recognized by Windows).
The isse is, when I try to do
memory.limit (size = 3000 )
the error doesn't resolve, and when I...