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...me users had success before then. It could be that something on our system changed, but I am not an admin so I wouldn't know where to look. Can anyone help with this problem? ## A LOCAL INSTALLATION OF HAPLO.STATS APPEARS SUCCESSFUL [sinnwell at dnode0 rpack]$ R CMD INSTALL -l /home/sinnwell/rdir/tmplib haplo.stats * Installing *source* package 'haplo.stats' ... ** libs make: `haplo.stats.so' is up to date. ** R ** data ** demo ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'haplo.stats' Formats: text h...

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error in dyn.load(x, as.logical(local), as.logical(now)) : >...

...SD.img if test $(whoami) != 'root' then echo 'Only the root can run this script!' exit 1 fi #SLV="3.72" ## Doesn't work #SLV="3.63" ## Works SLV="3.71" SYSLINUX="syslinux-$SLV" MTV="2.10" MEMTEST="memtest86+-$MTV" RDIR=$(cd $(dirname $0) && pwd) cd ${RDIR} if test ! -d downloads ; then mkdir downloads ; fi echo "$SYSLINUX" cd ${RDIR}/downloads if test ! -f $SYSLINUX.tar.bz2 then echo " Getting Syslinux" wget http://www.kernel.org/pub/linux/utils/boot/syslinux/$SYSLINUX.tar.bz2 fi...

...> main.c(412) > rsync: connection unexpectedly closed (8 bytes received so far) > [sender] > rsync error: error in rsync protocol data stream (code 12) at io.c > (434) my script; > #!/bin/sh > > bDir="/work/data" > rSvr="my.remote.domain" > rDir="/ftproot/" > attr="-auzv -e ssh --delete --exclude=\".*\" --exclude=\"~*\"" > > case `date +%a` in > Mon) > tDay="sunday" > yDay="saturday";; > Tue) > tDay="monday" > yDay="fri...

...mmand or bash # -Don Mahurin my(@command) = @ARGV; if(@command) { if ($command[0] =~ m:^-:) { unshift(@command,"bash") } # assume shell args @command = untaint(@command); } else { @command = ( "bash" ); } exit(1) unless(open(FILE, "/etc/rbusd/APPROOT")); my($rdir) = <FILE>; chomp($rdir); close(FILE); if($rdir =~ m:^(/mnt.*)$:) { $rdir = $1 } else { die "bad dir: $rdir"; } chdir($rdir) || die "can't chdir: $dir"; chroot($rdir) || die "can't chroot: $dir"; $> = $<; $ENV{PATH}="/bin:/usr/bin"; exec(@...

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have three C files, one of which I believe is causing the dynamic library error below. > library(haplo.s...

...c.jp/~nakama/AIX/AIX_iconv_CookBook.txt. Thanks Ei-ji Nakama for this CookBook :) The configuration step ends ok: ----------------------------------------------------------- R is now configured for powerpc-ibm-aix5.3.0.0 Source directory: . Installation directory: /rnd/homes/my/rdir/AIX/R-2.7.0 C compiler: xlc_r -q64 -qlanglvl=extc99 -O -qstrict Fortran 77 compiler: xlf_r -q64 -g C++ compiler: xlC_r -q64 -O -qstrict Fortran 90/95 compiler: xlf95 -g Obj-C compiler: Interfaces supported: X11 External libraries: Addi...

...i < LENGTH(theta); i++) { for(j = 0; j < LENGTH(VECTOR_ELT(pars, i)); j++, start += LENGTH(ans)) { SEXP ans_del; double origPar, xx, delta; origPar = REAL(VECTOR_ELT(pars, i))[j]; xx = fabs(origPar); delta = (xx == 0) ? eps : xx*eps; REAL(VECTOR_ELT(pars, i))[j] += rDir[i] * delta; PROTECT(ans_del = eval(expr, rho)); if(!isReal(ans_del)) ans_del = coerceVector(ans_del, REALSXP); UNPROTECT(1); for(k = 0; k < LENGTH(ans); k++) { if (!R_FINITE(REAL(ans_del)[k])) *error(_("Missing value or an infinity produced when evaluating the...

A couple of weeks ago I asked how it is possible to run an R script (not a function) passing some parameters. Someone suggested the function "commandArgs()". I read the on-line help and found no clarifying example. Therefore I do not know how to use it appropriately. I noticed this function returns the pathname of the R executable which is not what I need. I meant to ask if it is

...rid.circle.pos) & length(pp$grid.circle.pos) > 1) pp$rpretty <<- pp$grid.circle.pos pp$lab.dist <<- max(pp$rpretty) if (!is.null(pp$text.lab) || is.numeric(pp$num.lab)) { pp$lab.dist <<- max(pp$rpretty) * (1 + pp$tlabel.offset) } pp$rDir <<- seq(0, 2 * pi, length = pp$dir + 1)[-(pp$dir + 1)] print("pp$basis") }, newplot = function () { plot.new() ps <- max(pp$lab.dist, max(pp$rpretty)) plot.window(xlim = c(-ps, ps), ylim = c(-ps, ps), asp = 1) }, radial.grid = function (...) { if (p...

...(tlabel.offset + 1) } if (is.null(overlay)) { plot.new() ps <- max(lab.dist, max(rpretty)) plot.window(xlim = c(-ps, ps), ylim = c(-ps, ps), asp = 1) title(main = main, sub = sub) } drawgrid <- function() { if (dir > 0) { rDir <- seq(0, 2 * pi, length = dir + 1)[-(dir + 1)] segments(0, 0, max(rpretty) * cos(rDir), max(rpretty) * sin(rDir), col = grid.col, lwd = grid.lwd) } grid <- seq(0, 2 * pi, length = 360/4 + 1) for (rad in rpretty) {...

Dear R developers, I've run into a weird behavior of the numericDeriv function (from the stats package) which I also posted on StackOverflow (question has same title as this email, except for the version of R). Running the code bellow we can see that the numericDeriv function gives an error as the derivative of x^a wrt a is x^a * log(x) and log is not defined for negative numbers. However,

...uppet/var/lib/facter/custom_au th_conf.rb info: Loading facts in C:/ProgramData/PuppetLabs/puppet/var/lib/facter/facter_do t_d.rb info: Loading facts in C:/ProgramData/PuppetLabs/puppet/var/lib/facter/pe_versio n.rb info: Loading facts in C:/ProgramData/PuppetLabs/puppet/var/lib/facter/puppet_va rdir.rb info: Loading facts in C:/ProgramData/PuppetLabs/puppet/var/lib/facter/root_home .rb err: Could not retrieve catalog from remote server: Error 500 on SERVER: <h1>Pas senger error #2</h1> An error occurred while trying to access ''/var/opt/lib/pe-puppetmaster/config.ru '...

Hi, With help from Oleg we got the right patches applied and NFS working well. Maximum performance was about 60 MB/sec. Last week that dropped to about 12.5 MB/sec and I cannot find a reason. Lustre clients all obtain 100+ MB/sec on GigE. Each OST is good for 270 MB/sec. When mounting the client on one of the OSSs I get 230 MB/sec. Seems the speed is there. How can NFS and Lustre be tuned

...tag is written once (given the value of the first <s-topic>) and an \alias tag is written for each <s-topic> tag. Having multiple \name{} tags caused R CMD check to holler the following: * checking Rd files ... WARNING Rd files with duplicate 'name': /people/biostat3/sinnwell/Rdir/Make/haplo.stats/man/haplo.score.Rd These entries must be unique in an Rd file. I believe that the developers of Sd2Rd attempted to prevent this from happening. They use a variable named nalias (used as a Boolean and initialized to 0). If nalias is equal to 0 then the \name{} tag is written to t...

But the main question hasn't been answered: Why is /usr/local placed before user-specified paths? Hypothetical example: You want to link against OpenSSL 0.96 for OpenSSH, but /usr/local contains 0.95, which is needed for something else. (Assume it comes binary only on Solaris for the sake of argument...) --Matt > -----Original Message----- > From: Damien Miller [mailto:djm at

...n2.4/trac/versioncontrol/api.py", line 73, in pre_process_request self.get_repository(req.authname) # triggers a sync if applicable File "/var/lib/python-support/python2.4/trac/versioncontrol/api.py", line 101, in get_repository repos = self._connector.get_repository(rtype, rdir, authname) File "/var/lib/python-support/python2.4/trac/versioncontrol/svn_fs.py", line 259, in get_repository repos = SubversionRepository(dir, None, self.log) File "/var/lib/python-support/python2.4/trac/versioncontrol/svn_fs.py", line 281, in __init__ self.pool =...

...ac/versioncontrol/ api.py", line 73, in pre_process_request self.get_repository(req.authname) # triggers a sync if applicable File "/var/lib/python-support/python2.4/trac/versioncontrol/ api.py", line 101, in get_repository repos = self._connector.get_repository(rtype, rdir, authname) File "/var/lib/python-support/python2.4/trac/versioncontrol/ svn_fs.py", line 259, in get_repository repos = SubversionRepository(dir, None, self.log) File "/var/lib/python-support/python2.4/trac/versioncontrol/ svn_fs.py", line 281, in __init__ self...

...home/julian/src/freebsd/sys/kern/kern_descrip.c:1976 fdp = (struct filedesc *) 0xfffffe000b1a8000 fpp = (struct file **) 0xfffffe000b1a8098 i = 3 fdtol = <value optimized out> fp = (struct file *) 0xfffffe000b0e9aa0 cdir = <value optimized out> jdir = <value optimized out> rdir = <value optimized out> vp = <value optimized out> lf = {l_start = -547294201248, l_len = -2140995476, l_pid = 4, l_type = 0, l_whence = 0, l_sysid = 0} #13 0xffffffff805c4945 in exit1 (td=0xfffffe000b0af000, rv=0) at /usr/home/julian/src/freebsd/sys/kern/kern_exit.c:301 id = <val...