search for: rd_id

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2011 Jun 27
3
Creating a Polar Plot with expanding points as radius increases
...ind speed) and a "wd" (wind direction) column. My data is unrelated to wind speed, but I'd like to be able to get a plot that does what polarFreq's plots do; I'd like to have points that expand as their distance from the center increases. http://www.oga-lab.net/RGM2/func.php?rd_id=openair:polarFreq Without this property, my plot looks more like spokes on a wheel, or similar to the polar.plot function in the plotrix package: http://www.oga-lab.net/RGM2/func.php?rd_id=plotrix:polar.plot Is there a package or function available that allows the creation of a plot as described...
2012 Jan 30
1
Reg : Hello all.. help needed regarding heatmaps
...core for every month . I tried to generate a heatmap with this data and got some good results. Can some one help me on how to generate the legend next to heatmap please... can some one send me a sample code ..? Some of the useful link that i found on web : http://www.oga-lab.net/RGM2/func.php?rd_id=gplots:heatmap.2 Thanks in advance. [[alternative HTML version deleted]]
2012 Jul 22
1
Adding gamma and 3-parameter log normal distributions to L-moments ratio diagram lmrd()
...a data sample. # Draw an L-moment ratio diagram and add a line for the # Weibull distribution lmrd() weimom <- sapply( seq(0, 0.9, by=0.01), function(tau3) lmrwei(pelwei(c(0,1,tau3)), nmom=4) ) lmrdlines(t(weimom), col='darkgreen', lwd=2) source: http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=lmom:lmrdpoints Thank you. -- View this message in context: http://r.789695.n4.nabble.com/Adding-gamma-and-3-parameter-log-normal-distributions-to-L-moments-ratio-diagram-lmrd-tp4637345.html Sent from the R help mailing list archive at Nabble.com.
2012 Feb 11
1
AMOVA error: 'bin' must be numeric or a factor
Hi! I am trying to analyse my data using amova (http://www.oga-lab.net/RGM2/func.php?rd_id=pegas:amova): My input to R is a DNA sequence file, format=fasta dna<- read.dna("XX.fasta", format="fasta") #left other options as default d<- dist.dna(dna, model="raw") g<- read.table("XXX.design") Load necessary libraries: library(peg...
2012 Jul 17
1
tweaking forest plot (metafor package)
...ne=.5) > text(-1.55,42,"Esp?cie [ref?]",pos=4,font=2) I'd like to subdivide the "table" by the moderator 'grupo' - i.e. create the necessary spacings in the list of studies to accommodate the moderator statistics (cf. http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=metafor:addpoly.default). My main issue is that I cannot really understand how the function (forest()) really uses space; specifically, how to use the parameters 'xlim', 'ylim' and 'rows' in the function? how can I change the scale from 0-1 to 0.5-1? Hopefully I'...
2012 Jul 30
1
fractal package
Greetings of Peace! I am new in R software. I want to use the correlation dimension corrDim in computing a map. I have installed the packages(fractal) in R. Now my problem is this, when I tried your example in the following site http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=fractal:corrDim  > library(fractal) > png(filename="corrDim_%03d_med.png", width=480, height=480) > beam.d2 <- corrDim(beamchaos, olag=10, dim=10, res=4) Warning messages: 1: In any(diff(x)) : coercing argument of type 'double' to logical 2: In any(diff(x)) : coercing...
2011 Apr 11
1
Polar Plots
Dear List, Following the link below ( http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=plotrix:clock24.plot) I got an interesting polar plots which displayed my data and the time of observation. Thank you very much for providing such details. However, I have two set of data which I wish to display in the same polar plot. I tried using points to add the second data but could not succ...
2011 Dec 02
1
Willkommen bei der "R-help" Mailingliste
Hello everbody, I am new to this mailing list and hope to find some help. I'm trying to get into the spatstat package and encountered two problems. First a graphical one: There is an example dataset called "finpines" which has several marks (http://www.oga-lab.net/RGM2/func.php?rd_id=spatstat:finpines) When I pass the given code from the website to R data(finpines) plot(unmark(finpines), main="Finnish pines: locations") plot(finpines, which.marks="height", main="heights") plot(finpines, which.marks="diameter", main=&quot...
2012 May 29
1
Help needed in wavelet transforming
Hello I am currently working on forecasting hourly electricity prices where I am required to do wavelet transformation. First I need to calculate decomposition coefficients of the wavelet transform, then I need to select wavelet function using multiresolution technique. I would be really grateful if I can find any help in this matter. Thanking You with regards, -- Name : Tarun Trivedi Senior
2012 Aug 14
2
What package to use to calculate odds ratio and the confidence interval?
Hi list, I am trying to calculate the sensitivity, specificity, and odds ratio(and confidence interval). Say, my data looks like this 42.53, 37.56, 40.51, 32.67, 38.19, 81.74, 41.55, 68.94, 59, 63, 54.13, 48.85, 50.46, 51.78 Is there any packages in R that does this? Espeically the odds ratio confidence interval. Mike [[alternative HTML version deleted]]
2012 Jul 11
0
declaring negative log likelihood of a distribution
...for (i in 0:imax) { term=term+(((-1)**i)*(choose(b-1,i))*(beta(x+a+a*i,n-x+1))) } dens=a*b*choose(n,x)*term KBLL2<-sum(fre*log(dens)) return(-KBLL2) } * #Now to estimate the parameters, I used http://rgm2.lab.nig.ac.jp/RGM2/func.php?rd_id=bbmle:mle2 mle2(from the package bbmle) , which is a wrapper around the optim function *>estimates1=mle2(Loglik.newdis1, start=list(a=1,b=1), data=list(x=values,fre=frequency, n=7, imax=2000)) * Error in optim(par = c(1, 1), fn = function (p) : non-finite finite-difference value [1] In ad...
2011 Sep 09
2
Manhattan Plot
To whom it may concern: My name is Jillian Weinfeld. I am currently and undergraduate student at New York University and working at Mount Sinai School of Medicine doing research with epilepsy patients. At the moment I am creating a manhattan plot with my data set. After reading many forums and such, I have appropriately plotted my data, however, I wanted to see how I can change the colors of the
2012 Jul 20
3
function for inverse normal transformation
Hi, What is the function for inverse normal transformation? Thanks, Carol [[alternative HTML version deleted]]
2011 Apr 13
2
FW: how to enclose two xyplot
Dear R-users, I have to plot two xyplot, and I wish to enclose this two graphs with just one headline, the same x scale, the same grid etc. These parameters should tie in, in order to obtain, visually, a unique graph formed by two xyplot. I try to give an idea: xyplot1: |_|_|_| xyplot2: |_|_|_| what i want: | | | | |_|_|_| I tried to use the command
2011 Jul 21
4
squared "pie chart" - is there such a thing?
Hello! It's a shoot in the dark, but I'll try. If one has a total of 100 (e.g., %), and three components of the total, e.g., mytotal=data.frame(x=50,y=30,z=20), - one could build a pie chart with 3 sectors representing x, y, and z according to their proportions in the total. I am wondering if it's possible to build something very similar, but not on a circle but in a square - such that
2012 Jul 30
6
Convert variable to STring
Dear all, I have a variable that I would like also to use it as a string. The reasons is that I want to collect results from different function to one table.. So when I use the  colnames(mymatrix) <-c(function1.function2,function3) the function1, function2, function3 to be "converted" to simple strings so as  colnames(mymatrix)