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rats
2012 Sep 14
1
Correlation between random effects in the package coxme
Hello,
Why the correlation between the random effects is negative?
library(coxme)
rats1 <- coxme(Surv(time, status) ~ (1|litter), rats)
random.effects(rats1)[[1]] #one value for each of the 50 litters
print(rats1)
rats2 <- lmekin(time ~ (1|litter), rats)
fixed.effects(rats2)
random.effects(rats2)[[1]] #one value for each of the 50 litters
print(rats2)
cor(random.effects(rats1)[[1]],random.effects(rats2)[[1]])
Thanks
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2006 Jun 29
2
help with coxme
...estion on fitting data by coxme. In particular I want to fit a
random intercept and random slope cox model. Using the rats dataset as an
example, I generated another covariate x2 and want to specify a random slope
for x2. Here is my code:
x2=matrix(rep(runif(50), 3), 50, 3)
x2=as.vector(t(x2))
rats2=cbind(rats, x2)
But when I used the coxme function as follows, it gave an error message.
What is the right way to do it? Thanks a lot!
coxme(Surv(time, status) ~ rx+x2, data=rats2, random=~ (1+x2)|litter )
Lei Liu
Assistant Professor
Division of Biostatistics and Epidemiology
Dept. of Public...
2006 Jul 05
0
Problem with coxme
...22 at medschl.cam.ac.uk
Cc: R-help at stat.mat.ethz.ch, liulei at virginia.edu, spencer.graves at pdf.com
Content-MD5: BXKVsHtW/1I9mIUqrXBU0g==
The original question involved a strange error message from coxme when
trying to fit a random slopes model:
coxme(Surv(time, status) ~ rx+x2, data=rats2, random=~ (1+x2)|litter)
Synopsis
a. coxme does not yet support random slopes models
b. it should recognize the request and print a sensible error, instead
it just dies further down in the routine after it has gotton thoroughly
confused.
c. the actual error message is intere...