search for: r_xtra_lib

I've installed hdf5 [library & includes] here locally, last week. [see ?hdf5save in R] There is a remaining compilation / linking problem for me: The hdf5 library uses "compress2" a routine defined in Gnu's zlib, but not available in the zlib that comes with X11R6.3 (which we have installed). Now unfortunately, the final link statement for R (0.65) [for me, with hdf5

...S@ MAKEINDEX = @MAKEINDEX@ MKINSTALLDIRS = $(top_srcdir)/tools/mkinstalldirs R_PKGS = base ctest eda lqs modreg mva nls splines stepfun ts R_XTRA_CFLAGS = @R_XTRA_CFLAGS@ R_XTRA_CPPFLAGS = -I. -I../include -I$(top_srcdir)/src/include -I$(top_srcdir)/src/include/R_ext R_XTRA_FFLAGS = @R_XTRA_FFLAGS@ R_XTRA_LIBS = @R_XTRA_LIBS@ RANLIB = @RANLIB@ SHELL = /bin/sh SHLIBEXT = @SHLIBEXT@ SHLIBLD = @SHLIBLD@ SHLIBLDFLAGS = @SHLIBLDFLAGS@ TAR = @TAR@ X_CFLAGS = @X_CFLAGS@ X_LIBS = @X_LIBS@ X_PRE_LIBS = @X_PRE_LIBS@ X_EXTRA_LIBS = @X_EXTRA_LIBS@ YACC = @YACC@ ALL_CFLAGS = $(R_XTRA_CFLAGS) $(CFLAGS) ALL_CPPFLAGS...

...ALL_DIR = ${INSTALL} -d LATEX = /usr/local/bin/latex LDCMD = f77 LDFLAGS = LIBS = -ldl -ltermcap -lm LN_S = ln -s MAKEINDEX = /usr/local/bin/makeindex MKINSTALLDIRS = $(top_srcdir)/tools/mkinstalldirs R_XTRA_CFLAGS = R_XTRA_CPPFLAGS = -I. -I../include -I$(top_srcdir)/src/include R_XTRA_FFLAGS = R_XTRA_LIBS = RANLIB = ranlib SHELL = /bin/sh SHLIBEXT = so SHLIBLD = f77 SHLIBLDFLAGS = -bM:SRE -H512 -T512 -bnoentry -bexpall -bI:$(R_HOME)/etc/R. exp -lc -lm TAR = tar X_CFLAGS = X_LIBS = -lX11 X_PRE_LIBS = X_EXTRA_LIBS = YACC = bison -y -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-....

...mcap -lm LN_S = ln -s MAKEINDEX = /usr/local/bin/makeindex MKINSTALLDIRS = $(top_srcdir)/tools/mkinstalldirs R_PKGS = base ctest eda lqs modreg mva nls splines stepfun ts R_XTRA_CFLAGS = R_XTRA_CPPFLAGS = -I. -I../include -I$(top_srcdir)/src/include -I$(top_srcdir)/src/include/R_ext R_XTRA_FFLAGS = R_XTRA_LIBS = RANLIB = ranlib SHELL = /bin/sh SHLIBEXT = so SHLIBLD = gcc SHLIBLDFLAGS = -G TAR = tar X_CFLAGS = -I/usr/openwin/include X_LIBS = -L/usr/openwin/lib -R/usr/openwin/lib -lX11 X_PRE_LIBS = -lSM -lICE X_EXTRA_LIBS = -lsocket -lnsl YACC = bison -y ALL_CFLAGS = $(R_XTRA_CFLAGS) $(CFLAGS) ALL_CP...

...file #---------------------------------------------------------------------- # my problem ... #---------------------------------------------------------------------- Our /lib/crt0.o is the 32bit flavor. We also have a /lib/crt0_64.o so -- I changed the top-level Makeconf to reflect this. R_XTRA_LIBS = /lib/crt0_64.o #---------------------------------------------------------------------- # Something with the X11 support is not working. #---------------------------------------------------------------------- src/modules/X11/Makefile.in defines rules to create .lo objects, which (in 64 bit mo...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

...-linux-gnu' R_PRINTCMD='' R_PROFILING='' R_RD4DVI='ae' R_RD4PDF='times,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SAFE_FFLAGS='' SED='//bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FCD='' SHLIB_FCLD=''...

...#39;/usr/bin/xpdf' R_PLATFORM='i686-pc-linux-gnu' R_PRINTCMD='' R_PROFILING='' R_RD4DVI='ae' R_RD4PDF='times,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='...

...R_PAPERSIZE='' R_PLATFORM='sparc-sun-solaris2.8' R_PRINTCMD='' R_PROFILING='' R_RD4DVI='ae' R_RD4PDF='ae,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SET_MAKE='' SHELL='/bin/bash' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='' SHLIB_CXXLDFLAGS='' SHLIB_EXT='' SHLIB_FFLAGS='' SHLIB_LD='' SHLIB_LDFLAGS='' SHLIB_LIBADD='...