search for: r_x11

Hi the list, I just installed the R-1.7.0-1mdk.i516.rpm package on a mdk 9.1. All looks fine until I try to launch some graphics functions as png() or even demo( graphics). I receive the following example message: > png() Error in png() : R_X11 module cannot be loaded In addition: Warning message: unable to load shared library "/usr/lib/R/modules/R_X11.so": /usr/lib/R/modules/R_X11.so: undefined symbol: png_set_IHDR Also I verified that this file exists and it is. ~/>updatedb ~/>locate "R_x11.so" ~/>/usr/l...

...ng",height=480, width=640) Error in png(filename = "test.png", height = 480, width = 640) : X11 module cannot be loaded In addition: Warning message: In png(filename = "test.png", height = 480, width = 640) : unable to load shared library '/usr/local/lib/R/modules//R_X11.so': ld.so.1: R: fatal: libSM.so.6: open failed: No such file or directory The file '/usr/local/lib/R/modules//R_X11.so' was physically there. -bash-3.00$ ls -l /usr/local/lib/R/modules//R_X11.so -rwxr-xr-x 1 bin bin 112152 Oct 5 02:02 /usr/local/lib/R/modules//R_X11.s...

...;ll let you know as well Here's the session that crashes > library(car) > data(Chile) > edit(Chile) *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated ======= Backtrace: ========= /lib/libc.so.6(__chk_fail+0x29)[0xa8079d] /lib/libc.so.6[0xa8195d] /usr/lib/R/modules//R_X11.so[0x7c094a] /usr/lib/R/modules//R_X11.so[0x7c20dd] /usr/lib/R/modules//R_X11.so[0x7c3428] /usr/lib/R/modules//R_X11.so(RX11_dataentry+0xa25)[0x7c4b15] /usr/lib/R/lib/libR.so[0x2bf4c5] /usr/lib/R/lib/libR.so[0x1dfd26] /usr/lib/R/lib/libR.so(Rf_eval+0x483)[0x1b0973] /usr/lib/R/lib/libR.so[0x1b4d28]...

...iro TRUE TRUE TRUE TRUE FALSE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE Warning message: In doTryCatch(return(expr), name, parentenv, handler) : unable to load shared library '/Library/Frameworks/R.framework/Resources/modules/i386/R_X11.so': dlopen(/Library/Frameworks/R.framework/Resources/modules/i386/R_X11.so, 6): Library not loaded: /usr/X11/lib/libpng12.0.dylib Referenced from: /Library/Frameworks/R.framework/Resources/modules/i386/R_X11.so Reason: Incompatible library version: R_X11.so requires version 42.0.0 or lat...

Duncan, I don't know what we want, but it is not a simple matter of documenting what .dynLibs currently does. What I see as bugs are 1) the inconsistent names and types of the components returned by .dynLibs(). 2) the inconsistent inclusion or not of R_X11 in the list returned by .dynLibs(). 3) the inclusion of static info (base) by library.dynam(). 4) including loadable modules such as R_X11. 5) the documentation needs updating. Having .dynLibs() give a list of DLLinfo objects about DLLs loaded by packages, and summarizing those in library.dyn...

...yes After make, I can run R-2.2.1 from its build directory but I get the following X11 module loading error when trying to plot > plot(1:10) Error in X11() : X11 module cannot be loaded In addition: Warning message: unable to load shared library '/home/js36954/src/R-2.2.1/modules/R_X11.so': rtld: 0712-001 Symbol log10 was referenced from module /home/js36954/src/R-2.2.1/modules/R_X11.so(), but a runtime definition of the symbol was not found. rtld: 0712-001 Symbol floor was referenced from module /home/js36954/src/R-2.2.1/modules/R_X11.so(), but a runtime defini...

....dynLibs() do not work as documented Duncan, I don't know what we want, but it is not a simple matter of documenting what .dynLibs currently does. What I see as bugs are 1) the inconsistent names and types of the components returned by .dynLibs(). 2) the inconsistent inclusion or not of R_X11 in the list returned by .dynLibs(). 3) the inclusion of static info (base) by library.dynam(). 4) including loadable modules such as R_X11. 5) the documentation needs updating. Having .dynLibs() give a list of DLLinfo objects about DLLs loaded by packages, and summarizing those in library.dyn...

...I tried to edit data read from a csv file, R system crushed, I got an error message as follows: > edit(data) *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated ======= Backtrace: ========= /lib/libc.so.6(__chk_fail+0x41)[0x49d020b1] /lib/libc.so.6[0x49d034a2] /usr/lib/R/modules//R_X11.so[0x33ed7a] /usr/lib/R/modules//R_X11.so[0x34050d] /usr/lib/R/modules//R_X11.so[0x341858] /usr/lib/R/modules//R_X11.so(RX11_dataentry+0xa25)[0x342f45] /usr/lib/R/lib/libR.so[0xa34675] /usr/lib/R/lib/libR.so[0x954ed6] /usr/lib/R/lib/libR.so(Rf_eval+0x483)[0x925b23] /usr/lib/R/lib/libR.so[0x929ed8]...

...I tried to edit data read from a csv file, R system crushed, I got an error message as follows: > edit(data) *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated ======= Backtrace: ========= /lib/libc.so.6(__chk_fail+0x41)[0x49d020b1] /lib/libc.so.6[0x49d034a2] /usr/lib/R/modules//R_X11.so[0x33ed7a] /usr/lib/R/modules//R_X11.so[0x34050d] /usr/lib/R/modules//R_X11.so[0x341858] /usr/lib/R/modules//R_X11.so(RX11_dataentry+0xa25)[0x342f45] /usr/lib/R/lib/libR.so[0xa34675] /usr/lib/R/lib/libR.so[0x954ed6] /usr/lib/R/lib/libR.so(Rf_eval+0x483)[0x925b23] /usr/lib/R/lib/libR.so[0x929ed8]...

...e) >> Kernel \r on an \m > > Agh, sorry. Yes, x11() (with or without $DISPLAY set) doesn't > die catatrophically, x11("validinfo") does. > > HTL The culprit would seem to be this bit of devX11.c 1302 xtdpy =3D XtOpenDisplay(app_con, NULL, "r_x11",=20 "R_x11", 1303 NULL, 0, &zero, NULL); 1304 toplevel =3D XtAppCreateShell(NULL, "R_x11", The 2nd arg to XtOpenDisplay is listed as display_string, so passing a=20 NULL here seems like trouble when the defau...

...t; plot(seq(22)) Error in (function (display = "", width, height, pointsize, gamma, bg, : X11 module cannot be loaded In addition: Warning message: In (function (display = "", width, height, pointsize, gamma, bg, : unable to load shared object '/usr/lib/R/modules//R_X11.so': /usr/lib/x86_64-linux-gnu/libpng12.so.0: version `PNG12_0' not found (required by /usr/lib/R/modules//R_X11.so) and this is my sessionInfo() > sessionInfo() R version 3.2.4 Revised (2016-03-16 r70336) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Lin...

...1]: `Makedeps' is up to date. make[1]: Leaving directory `/home/mau/sy/R-2.2.0/src/modules/X11' make[1]: Entering directory `/home/mau/sy/R-2.2.0/src/modules/X11' /usr/local/bin/gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall -Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so dataentry.lo devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11 -ljpeg -lpng -lz /usr/local/lib/gcc/powerpc-ibm-aix4.3.2.0/3.4.3/../../../../powerpc-ibm-aix4.3.2.0/bin/ld: -static and -shared may not be used together collect2: ld returned 1 exit status make[1]: *** [R_X11.so] Error 1 make[1]: L...

...ary.dynam() Filename Dynamic.Lookup base base FALSE stats /usr/local/lib/R/library/stats/libs/stats.so TRUE methods /usr/local/lib/R/library/methods/libs/methods.so TRUE R_X11 /usr/local/lib/R/modules/R_X11.so TRUE whereas 1.9.1 gives > library.dynam() [1] "stats" "methods" and the documentation says If 'chname' is not specified, 'library.dynam' returns a character vector with the names of...

...MAIN_LD="/usr/local/bin/gcc" then I run into the following problem with dynamic linking: make[4]: Entering directory `/home/mau/sy/R-2.2.0/src/modules/X11' /usr/local/bin/gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall -Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so dataentry.lo devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11 -ljpeg -lpng -lz /usr/local/lib/gcc/powerpc-ibm-aix4.3.2.0/3.4.3/../../../../powerpc-ibm-aix4.3.2.0/bin/ld: -static and -shared may not be used together collect2: ld returned 1 exit status make[4]: *** [R_X11.so] Error 1 If I add...

...er, I get the following when running demo(graphics): > if (dev.cur() <= 1) get(getOption("device"))() Error in get(getOption("device"))() : X11 module cannot be loaded In addition: Warning message: unable to load shared library '/appl/perform/workspace/R-2.2.1/modules/R_X11.so': Could not load module /appl/perform/workspace/mbeason/R-2.2.1/modules/R_X11.so. Dependent module /usr/java14/jre/bin/libjpeg.a(libjpeg.so.62) could not be loaded. File /usr/java14/jre/bin/libjpeg.a is not an archive or the file could not be read properly. System...

...work/Resources/library/grDevices/libs/grDevices.so stats /Library/Frameworks/R.framework/Resources/library/stats/libs/stats.so methods /Library/Frameworks/R.framework/Resources/library/methods/libs/methods.so K_MEANSC /Users/admin/Desktop/Marie/Marie_labo_29_juin/K-means_versions/MAC/K_MEANSC.so R_X11 /Library/Frameworks/R.framework/Resources/modules/R_X11.so Dynamic.Lookup base FALSE grDevices FALSE stats FALSE methods FALSE K_MEANSC TRUE R_X11 TRUE I then source the R code: > source(file.choose()) Const...

...46) [0x3c8765e5d6] [ 4] /usr/lib64/libX11.so.6(_XlcUtf8Loader+0x10) [0x3c8767ebe0] [ 5] /usr/lib64/libX11.so.6(_XOpenLC+0x104) [0x3c87665674] [ 6] /usr/lib64/libX11.so.6(_XlcCurrentLC+0x8) [0x3c87665768] [ 7] /usr/lib64/libX11.so.6(XSupportsLocale+0x9) [0x3c87665b59] [ 8] /usr/lib64/R/modules//R_X11.so(X11_Open+0x51) [0x2aaab8a32581] [ 9] /usr/lib64/R/modules//R_X11.so(X11DeviceDriver+0x19a) [0x2aaab8a336aa] [10] /usr/lib64/R/modules//R_X11.so [0x2aaab8a33c30] [11] /usr/lib64/R/lib/libR.so [0x3659cff75e] [12] /usr/lib64/R/lib/libR.so(Rf_eval+0x427) [0x3659ccc2d7] [13] /usr/lib64/R/lib/lib...

...ed around the archives for R-help and R-sig Fedora and found that a lot of people have had the same errors I've gotten when starting up the X11() module: Error in X11() : X11 module cannot be loaded In addition: Warning message: In X11() : unable to load shared library '/usr/lib/R/modules//R_X11.so': /usr/lib/libfontconfig.so.1: undefined symbol: FT_Select_Size But I have come across zero answers to this fundamental problem. (At least none that make sense to a newbie user like me.) This is after a fresh install of R on Fedora 13 via Yum. I checked and /usr/lib/R/modules/R_X11.so i...

Hello all, This is my first time posting, so forgive my ignorance. I've searched high and low but haven't come across the specific answer to my questions. configure runs fine, then make gives this error: ... gcc -shared -L/usr/local/lib -o R_X11.so dataentry.lo devX11.lo rotated.lo rbitmap.lo -L/usr/X11R6/lib -lX11 -ljpeg -lpng -lz -lreadline -ldl -lncurses -lm /usr/bin/ld: skipping incompatible /usr/X11R6/lib/libX11.so when searching for -lX11 /usr/bin/ld: skipping incompatible /usr/X11R6/lib/libX11.a when searching for -lX11 /us...

...? I'd be curious to know the differences with my own as while I have R installed, I still get the error related to libjpeg.a. Error in get(getOption("device"))() : X11 module cannot be loaded In addition: Warning message: unable to load shared library '/usr/local/R/lib/R/modules/R_X11.so': Could not load module /usr/local/R/lib/R/modules/R_X11.so. Dependent module /usr/java14/jre/bin/libjpeg.a(libjpeg.so.62) could not be loaded. File /usr/java14/jre/bin/libjpeg.a is not an archive or the file could not be read properly. System error: Exec format e...