Displaying 15 results from an estimated 15 matches for "r_execclosure".
2017 Jun 27
0
Seg Fault memory violation
...seCache=useCache at entry=TRUE) at eval.c:5873
5873 {
(gdb) bt
#0 bcEval (body=body at entry=0x857990, rho=rho at entry=0x17f3d798, useCache=useCache at entry=TRUE) at eval.c:5873
#1 0x00007ffff78d4138 in Rf_eval (e=0x857990, rho=rho at entry=0x17f3d798) at eval.c:624
#2 0x00007ffff78d61af in R_execClosure (call=call at entry=0x6079c0, newrho=<optimized out>, sysparent=<optimized out>,
rho=rho at entry=0x17f3d450, arglist=arglist at entry=0x0, op=op at entry=0x857a70) at eval.c:1614
#3 0x00007ffff78d6539 in Rf_applyClosure (call=call at entry=0x3ae5cb0, op=op at entry=0x857a70, argli...
2018 Mar 29
2
Possible `substr` bug in UTF-8 Corner Case
...ot;UTF-8"
> substr(string, 1, 10)
==15375== Invalid read of size 1
==15375==??? at 0x45B3F0: substr (character.c:286)
==15375==??? by 0x45B3F0: do_substr (character.c:342)
==15375==??? by 0x4CFCB9: bcEval (eval.c:6775)
==15375==??? by 0x4D95AF: Rf_eval (eval.c:624)
==15375==??? by 0x4DAD12: R_execClosure (eval.c:1764)
==15375==??? by 0x4D9561: Rf_eval (eval.c:747)
==15375==??? by 0x507008: Rf_ReplIteration (main.c:258)
==15375==??? by 0x5073E7: R_ReplConsole (main.c:308)
==15375==??? by 0x507494: run_Rmainloop (main.c:1082)
==15375==??? by 0x41A8E6: main (Rmain.c:29)
==15375==? Address 0xb9e518d is...
2024 Feb 07
2
Difficult debug
...by 0x299B2C: Rf_allocVector (Rinlinedfuns.h:595)
> ==31730== by 0x299B2C: R_alloc (memory.c:2330)
> ==31730== by 0x3243C6: do_which (summary.c:1152)
> ==31730== by 0x23D8EF: bcEval (eval.c:7724)
> ==31730== by 0x25731F: Rf_eval (eval.c:1152)
> ==31730== by 0x25927D: R_execClosure (eval.c:2362)
> ==31730== by 0x25A35A: R_execMethod (eval.c:2535)
> ==31730== by 0x887E93F: R_dispatchGeneric (methods_list_dispatch.c:1151)
> ==31730== by 0x2A0E72: do_standardGeneric (objects.c:1344)
> ==31730== by 0x2577E7: Rf_eval (eval.c:1254)
> ==31730== by 0x259...
2024 Feb 07
2
Difficult debug
...memory.c:2861)
==31730==??? by 0x299B2C: Rf_allocVector (Rinlinedfuns.h:595)
==31730==??? by 0x299B2C: R_alloc (memory.c:2330)
==31730==??? by 0x3243C6: do_which (summary.c:1152)
==31730==??? by 0x23D8EF: bcEval (eval.c:7724)
==31730==??? by 0x25731F: Rf_eval (eval.c:1152)
==31730==??? by 0x25927D: R_execClosure (eval.c:2362)
==31730==??? by 0x25A35A: R_execMethod (eval.c:2535)
==31730==??? by 0x887E93F: R_dispatchGeneric (methods_list_dispatch.c:1151)
==31730==??? by 0x2A0E72: do_standardGeneric (objects.c:1344)
==31730==??? by 0x2577E7: Rf_eval (eval.c:1254)
==31730==??? by 0x25927D: R_execClosure (eval....
2018 Mar 29
0
Possible `substr` bug in UTF-8 Corner Case
...ing, 1, 10)
> ==15375== Invalid read of size 1
> ==15375==??? at 0x45B3F0: substr (character.c:286)
> ==15375==??? by 0x45B3F0: do_substr (character.c:342)
> ==15375==??? by 0x4CFCB9: bcEval (eval.c:6775)
> ==15375==??? by 0x4D95AF: Rf_eval (eval.c:624)
> ==15375==??? by 0x4DAD12: R_execClosure (eval.c:1764)
> ==15375==??? by 0x4D9561: Rf_eval (eval.c:747)
> ==15375==??? by 0x507008: Rf_ReplIteration (main.c:258)
> ==15375==??? by 0x5073E7: R_ReplConsole (main.c:308)
> ==15375==??? by 0x507494: run_Rmainloop (main.c:1082)
> ==15375==??? by 0x41A8E6: main (Rmain.c:29)
> =...
2018 Jun 28
1
Null pointer dereference in Rf_isVector()
...5.0/src/main/attrib.c:1099
#2 0x5c4f72 in Rf_setAttrib R-3.5.0/src/main/attrib.c:259:9
#3 0x5db48d in do_attributesgets R-3.5.0/src/main/attrib.c:1373:6
#4 0x84b939 in bcEval R-3.5.0/src/main/eval.c:7082:12
#5 0x8171df in Rf_eval R-3.5.0/src/main/eval.c:624:8
#6 0x8669a2 in R_execClosure R-3.5.0/src/main/eval.c
#7 0x817d7f in Rf_eval R-3.5.0/src/main/eval.c:747:12
#8 0x93cfa4 in Rf_ReplIteration R-3.5.0/src/main/main.c:258:2
#9 0x941e7a in R_ReplConsole R-3.5.0/src/main/main.c:308:11
#10 0x941e7a in run_Rmainloop R-3.5.0/src/main/main.c:1082
#11 0x50080a in...
2020 Jun 09
2
valgrind false positive on R startup?
...tre-parse.c:1380)
==9565== by 0x50B2498: tre_compile (tre-compile.c:1920)
==9565== by 0x50AFBE0: tre_regcompb (regcomp.c:150)
==9565== by 0x4FA9F42: do_gsub (grep.c:2023)
==9565== by 0x4F79045: bcEval (eval.c:7090)
==9565== by 0x4F8572F: Rf_eval (eval.c:723)
==9565== by 0x4F8754E: R_execClosure (eval.c:1888)
==9565== by 0x4F88316: Rf_applyClosure (eval.c:1814)
==9565== by 0x4F85902: Rf_eval (eval.c:846)
==9565==
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free softwa...
2018 Aug 06
2
SIGSEGV in R_RunWeakRefFinalizer, object allocated with Rcpp
...all=0x1d45b88, op=0x15241d0, args=0x1d454b8,
rho=0x1d45318) at memory.c:2013
#6 0x6c9db60f in bcEval (body=body at entry=0x1d45a88,
rho=rho at entry=0x1d45318, useCache=useCache at entry=TRUE)
at eval.c:6781
#7 0x6c9ecfb2 in Rf_eval (e=0x1d45a88, rho=0x1d45318) at eval.c:624
#8 0x6c9ee6f1 in R_execClosure (call=call at entry=0x0,
newrho=<optimized out>, sysparent=<optimized out>,
rho=0x15a3370, arglist=0x18c2498, op=0x1d45968) at eval.c:1773
#9 0x6c9ef605 in Rf_applyClosure (call=0x15a3370,
call at entry=0x1d45828, op=0x18c2498, op at entry=0x1d45968,
arglist=0x1d45968, rho=rho...
2017 Feb 22
0
Crash in the latest release
...F: do_dotcall (dotcode.c:1252)
==31901== by 0x80FFABA: Rf_eval (eval.c:728)
==31901== by 0x810308A: do_set (eval.c:2579)
==31901== by 0x80FF907: Rf_eval (eval.c:700)
==31901== by 0x8101F20: do_begin (eval.c:2187)
==31901== by 0x80FF907: Rf_eval (eval.c:700)
==31901== by 0x810141B: R_execClosure (eval.c:1614)
==31901== by 0x80FF711: Rf_eval (eval.c:747)
==31901== by 0x8101F20: do_begin (eval.c:2187)
==31901==
==31901== Invalid write of size 4
==31901== at 0xA13DA31: cholmod_start (cholmod_common.c:184)
==31901== by 0xD8B3065: cholmod_start (in /home/therneau/Rlib/lme4/libs/lme4...
2017 Feb 22
0
[Lme4-authors] Crash in the latest release
...> ==31901== by 0x80FFABA: Rf_eval (eval.c:728)
> ==31901== by 0x810308A: do_set (eval.c:2579)
> ==31901== by 0x80FF907: Rf_eval (eval.c:700)
> ==31901== by 0x8101F20: do_begin (eval.c:2187)
> ==31901== by 0x80FF907: Rf_eval (eval.c:700)
> ==31901== by 0x810141B: R_execClosure (eval.c:1614)
> ==31901== by 0x80FF711: Rf_eval (eval.c:747)
> ==31901== by 0x8101F20: do_begin (eval.c:2187)
> ==31901==
> ==31901== Invalid write of size 4
> ==31901== at 0xA13DA31: cholmod_start (cholmod_common.c:184)
> ==31901== by 0xD8B3065: cholmod_start (in
>...
2019 Jul 01
1
ASAN error with R-devel
...c/library/tcltk/src/tcltk.c:697
??? #12 0x5582e3aa93c1 in do_dotCode /usr/local/src/R-devel/src/main/dotcode.c:1743
??? #13 0x5582e3b41f79 in bcEval /usr/local/src/R-devel/src/main/eval.c:6775
??? #14 0x5582e3b6a5df in Rf_eval /usr/local/src/R-devel/src/main/eval.c:620
??? #15 0x5582e3b702b9 in R_execClosure /usr/local/src/R-devel/src/main/eval.c:1780
??? #16 0x5582e3b72777 in Rf_applyClosure /usr/local/src/R-devel/src/main/eval.c:1706
??? #17 0x5582e3b4ab0a in bcEval /usr/local/src/R-devel/src/main/eval.c:6743
??? #18 0x5582e3b6a5df in Rf_eval /usr/local/src/R-devel/src/main/eval.c:620
??? #19 0x5...
2004 Sep 13
6
Spare some CPU cycles for testing lme?
If anyone has a few extra CPU cycles to spare,
I'd appreciate it if you could verify a problem that I
have encountered. Run the code
below and tell me if it crashes your R before
completion.
library(lme4)
data(bdf)
dump<-sapply( 1:50000, function(i) {
fm <- lme(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen, data = bdf,
random = ~ IQ.ver.cen | schoolNR);
cat("
2018 Aug 09
0
SIGSEGV in R_RunWeakRefFinalizer, object allocated with Rcpp
...gs=0x1d454b8,
> rho=0x1d45318) at memory.c:2013
> #6 0x6c9db60f in bcEval (body=body at entry=0x1d45a88,
> rho=rho at entry=0x1d45318, useCache=useCache at entry=TRUE)
> at eval.c:6781
> #7 0x6c9ecfb2 in Rf_eval (e=0x1d45a88, rho=0x1d45318) at eval.c:624
> #8 0x6c9ee6f1 in R_execClosure (call=call at entry=0x0,
> newrho=<optimized out>, sysparent=<optimized out>,
> rho=0x15a3370, arglist=0x18c2498, op=0x1d45968) at eval.c:1773
> #9 0x6c9ef605 in Rf_applyClosure (call=0x15a3370,
> call at entry=0x1d45828, op=0x18c2498, op at entry=0x1d45968,
>...
2020 Jun 10
0
valgrind false positive on R startup?
...= by 0x50B2498: tre_compile (tre-compile.c:1920)
> ==9565== by 0x50AFBE0: tre_regcompb (regcomp.c:150)
> ==9565== by 0x4FA9F42: do_gsub (grep.c:2023)
> ==9565== by 0x4F79045: bcEval (eval.c:7090)
> ==9565== by 0x4F8572F: Rf_eval (eval.c:723)
> ==9565== by 0x4F8754E: R_execClosure (eval.c:1888)
> ==9565== by 0x4F88316: Rf_applyClosure (eval.c:1814)
> ==9565== by 0x4F85902: Rf_eval (eval.c:846)
> ==9565==
>
> R version 4.0.0 (2020-04-24) -- "Arbor Day"
> Copyright (C) 2020 The R Foundation for Statistical Computing
> Platform: x86_64-pc-l...
2018 Apr 12
1
WGCNA package installation segmentation fault
Hi all,
a user contacted me about a segfault when installing WGCNA package
dowloaded from CRAN. I also see a segfault like that on certain
installs of R.
The package passes all CRAN checks, so presumably this has something
to do with the R installation or environment. The R versions here are
not the newest but I would guess that this is not an R version issue.
I'm attaching two