search for: r_ex

...ool's cygwin dependency. forking (as much of make and sh is forking sub-processes) on posix-on-win32-on-posix currently doesn't work. (http://wiki.winehq.org/CygwinSupport) Cross-compiling: The instruction in R/src/gnuwin32/README.packages essentially works, with one missing detail: "R_EXE=/usr/bin/R" is also needed. Thus it should be: make R_EXE=/usr/bin/R PKGDIR=/mysources RLIB=/R/win/library \ pkg-mypkg make P_EXE=/usr/bin/R KGDIR=/mysources RLIB=/R/win/library \ pkgcheck-mypkg Hin-Tak Leung

...q ($(findstring devel, $(R)), devel) RURL = ftp://ftp.stat.math.ethz.ch/Software/R REXT = tar.gz else RURL = http://cran.us.r-project.org/src/base/R-2 REXT = tar.gz endif R_TCL_URL = http://www.murdoch-sutherland.com/Rtools/R_Tcl.zip #MINGW_CROSS = mingw-cross2 now: MINGW_CROSS = mingw-cross4 ## R_EXE LinuxFresh = YES ifeq ($(strip $(LinuxFresh)),YES) R_EXE = $(LINUXR)/R/bin/R else R_EXE = R endif default: @echo "syntax:" @echo "make <target>" @echo "No <Target> Specified. Should be one of:" @echo " " @echo "-------------------&qu...

...l] Erro 2 make[3]: *** [pkg-base] Erro 2 make[2]: *** [rpackage] Erro 2 make[1]: *** [all] Erro 2 make[1]: Saíndo do directorio `/home/iago/crossbuild/WinR/R-2.0.0/src/gnuwin32' The error appears in the call to $(REXE), that was defined in R-2.0.0/src/gnuwin32/MakePkg (Line 18) as: REXE = $(R_EXE) --vanilla --slave I tried substituting REXE with R --vanilla --slave and that did the trick, only to later fail with a complain about $(R_HOME). Is there any reason for this failure in the Makefile variables? Anything to do with the change from 1.9.1 to 2.0.0? Many thanks, Iago Mosqueira...

...ion of R (2.0.0) to another? I ask this as I'm trying to cross-compile R (for ARM), and need to use R itself to perform the lazy-loading db setup (and probably other things) as part of the build process. Therefore I build a native version of R (x86) and pass the path of the native R binary as R_EXE in the arm cross-build Makefiles (in src/library and its sub-directories). This fails with the following error: | make[3]: Entering directory `/home/simon/dev/bk/build/tmp/work/r-2.0.0-r0/R-2.0.0/src/library/base' | building package 'base' | mkdir -p -- ../../../library/base/demo mkd...

...5001 Done ( echo "options(warn=1); invisible(.libPaths(c(\"${lib}\", .libPaths()))); .getRequiredPackages(); tools:::makeLazyLoading(\"${R_PACKAGE_NAME}\", \"${lib}\")" ) 25002 Aborted (core dumped) | R_DEFAULT_PACKAGES= LC_ALL=C "${R_EXE}" --vanilla --slave ERROR: lazy loading failed for package 'portfolio.construction' ** Removing '/usr/local/lib64/R/library/portfolio.construction' ** Restoring previous '/usr/local/lib64/R/library/portfolio.construction' [whit at linuxsvr R.packages]$ I've tried...

...image.defaults=${save_image_defaults})"; if test -s R_PROFILE.R; then cat R_PROFILE.R; fi; echo "invisible(.libPaths(c(\"${lib}\", .libPaths())))"; cat "${R_PACKAGE_DIR}/R/${pkg}" ) 1857 Segmentation fault | ${R_EXE} --slave --save ${save_args} ERROR: execution of package source for 'DBI' failed Can somebody help me? Thanks a lot, Kind regards, Joke. Joke Allemeersch Kasteelpark Arenberg 10 3001 Heverlee (Leuven) http://www.esat.kuleuven.ac.be/~dna/BioI/ [[alternative HTML v...

...n I run 'make' under src/library/base: ../../../library/base/R/base is unchanged ../../../bin/R: bad substitution make: *** [all] Error 1 I traced it down to the following line in src/library/base/Makefile: @cat $(srcdir)/makebasedb.R | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE) --slave > /dev/null I am trying to build R-2.6.2 on a Solaris 9 box. Can anyone advise on what may go wrong? Thank you. [[alternative HTML version deleted]]

...\bin;C:\perl\bin;C:\texmf\miktex\bin;C:\HTMLws\;C:\R201\R201\bin;%System Root%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;C:\Program Files\ Common Files\Adaptec Shared\System;C:\LINGO9\ and Mkrules has been edited and reads # path (possibly full path) to same version of R on the host system R_EXE=C:/R201/R201/bin when I type make I get the following: ---------- Making package base ------------ adding build stamp to DESCRIPTION C:/R201/R201/bin: not found make[4]: *** [frontmatter] Error 127 make[3]: *** [all] Error 2 make[2]: *** [pkg-base] Error 2 make[1]: *** [rpackage] Error 2 make:...

...s: <Anonymous> -> <Anonymous> -> dir.create Execution halted make[2]: *** [all] Error 1 make[1]: *** [R] Error 1 make: *** [all] Error 2 And it was caused by @$(ECHO) "tools:::data2LazyLoadDB(\"$(pkg)\", compress=3)" | \ R_DEFAULT_PACKAGES=NULL LC_ALL=C $(R_EXE) > /dev/null at the Makefile.win in the src/datasets directory I am using Window XP and tried to compile 2.11.1 version. I can't imagine how I can solve this problem. Any hints or suggestions will be appreciated. Thank you. Lee. [[alternative HTML version deleted]]

...1506-277 (S) Syntax error: possible missing ';' or ','? Solution: add variable argument list in Rvprintf(const char *format, va_list arg, ...) add ';' in line 591 @echo "tools:::makeLazyLoading(\"$(pkg)\")" | \ R_DEFAULT_PACKAGES=NULL LC_COLLATE=C $(R_EXE) --slave > /dev/null in Makefiles of various packages leads to: *** caught illegal operation *** address 10000000, cause 'illegal opcode' With best regards, Karsten Tabelow

...):+/cygdrive/\1+; } which does not work if the build environment is a MINGW. I have added the patch below, Yours, Steffen $ diff -u build build.orig --- build Fri Jun 29 13:50:16 2007 +++ build.orig Fri Jun 29 08:51:48 2007 @@ -47,7 +47,6 @@ R::Vars::error("R_HOME", "R_EXE"); my $WINDOWS = ($R::Vars::OSTYPE eq "windows"); -my $MSYS = ( $ENV{OSTYPE} eq "msys" ); my @exclude_patterns = R::Utils::get_exclude_patterns(); @@ -222,14 +221,10 @@ my $filepath = &file_path($startdir, $filename); ## under Windows, need separate...

...MDDhhmm[.SS]] file ... *** Error code 1 I traced this down to the Makefile in methods: $(top_builddir)/library/$(pkg)/R/$(pkg).rdb: $(top_builddir)/library/$(pkg)/R/all.rda @echo "tools:::makeLazyLoading(\"$(pkg)\")" | \ R_DEFAULT_PACKAGES=NULL LC_COLLATE=C $(R_EXE) --slave > /dev/null @cat /dev/null > $(top_builddir)/library/$(pkg)/R/all.rda @touch $^ I'm not sure what it is about that touch call, but commenting it out causes things to build normally. When I try to echo '$^', it appears to be an empty string. This is al...

...MDDhhmm[.SS]] file ... *** Error code 1 I traced this down to the Makefile in methods: $(top_builddir)/library/$(pkg)/R/$(pkg).rdb: $(top_builddir)/library/$(pkg)/R/all.rda @echo "tools:::makeLazyLoading(\"$(pkg)\")" | \ R_DEFAULT_PACKAGES=NULL LC_COLLATE=C $(R_EXE) --slave > /dev/null @cat /dev/null > $(top_builddir)/library/$(pkg)/R/all.rda @touch $^ I'm not sure what it is about that touch call, but commenting it out causes things to build normally. When I try to echo '$^', it appears to be an empty string. This is al...

...re to create a C:\temp directory, or include $TMP or $TEMP in Var.pm. I did the latter, and it works for me. I include the fix below. if($OSTYPE eq "windows"){ ## DON'T add R_HOME/bin here: it might contain spaces and will not ## work using system() under Windows 98. $R_EXE = "Rterm.exe"; $R_CMD = "Rcmd.exe"; getenv("TMPDIR", "TMP", "TEMP", "C:/TEMP"); # Edited to include TMP and TEMP print "tmpdir is $TMPDIR\n"; # Edited to include print if (-d $TMPDIR) { $TMPDIR = Win32::GetSh...

...ey's suggestion: $WINDOWS = ($OS eq "windows"); if($WINDOWS) { $TMPDIR = R_getenv("TMPDIR", "/TEMP"); print "tmpdir is $tmpdir\n"; # added line die "Please set TMPDIR to a valid temporary directory\n" unless (-e $tmpdir); $R_exe = "Rterm.exe"; $LATEX = "latex"; $MAKE = "make"; } The output is below: F:\r\library>f:\r\bin\rcmd check ringsim tmpdir is Please set TMPDIR to a valid temporary directory So it does indeed appear that there is no tmpdir. How can I set this variable? The...

...\ test "${R_HOME}" != "${R_HOME_DIR}"; then echo "WARNING: ignoring environment value of R_HOME" fi - Here is line 606 of <R_HOME>/bin/INSTALL: CLINK_CPPFLAGS=`echo "tools:::.find_cinclude_paths(file='DESCRIPTION')" | \ "${R_EXE}" --vanilla --slave` The work-around: First some background. The command sequence "R CMD INSTALL" sets in motion a sequence of scripts that collectively manage the installation process. "R" <R_HOME>/bin/R calls Rcmd script on line 148...

Well, I'm finally getting around to setting up a cross-compiler for Windows on my local Linux box. I'm using the Yan & Rossini's docuimentation and the latest 'http://cran.r-project.org/doc/contrib/Makefile-rcb' , which is working of the R-2.2.0 sources. After discovering that "cp -p" doesn't work on the filesystem I'm using and removing the

...ure and put the package-to-be "removal" in C:\toBuild -I edited my path to : C:\Rtools\bin;C:\perl\bin;C:\Rtools\MinGW\bin;C:\R-2.5.0\bin;... -I changed the following in the MkRules file: 1)HEADER=C:/Rtools/MinGW/include 2)HELPTYPES = -txt 3)WINHELP = NO 4)HEADER=C:/Rtools/MinGW/include 5)R_EXE=C:/R-2.5.0/bin/R.exe -Next, I opened up a command prompt and went to c:/toBuild -Then I ran: R CMD build removal. No problems. -Then I ran: R CMD INSTALL removal_1.0.tar.gz and got this: --------------------- installing to 'c:/R-2.5.0/library' latex: not found latex: not found latex: not...

Hi, I would like to get a hint on how to debug in the case of #> R CMD check pllib signalling * checking for code/documentation mismatches ... WARNING Error in parse(file, n, text, prompt) : syntax error on line 22 I am able to sort out which of the files is the culprit is by swapping files in and out of the /R and /man directories. But I cannot find the syntax error, the .Rd file seems

...ms to be in the block starting at line 298: > | > | > | > | lib=`tilde_expand "${lib}"` > | if test -z "${lib}"; then > | lib=`echo "cat('\n~~~', .libPaths()[1], '\n', sep = '')" | \ > | R_DEFAULT_PACKAGES=NULL "${R_EXE}" --no-save --slave | \ > | grep '^~~~' | sed 's/.*~~~//'` > | message "Installing to library '$lib'" > | else > | lib0=${lib} > | cd ${lib} <-------------- PROBLEM directory must not exist (call MKDIR_P before ?) > | l...