Displaying 15 results from an estimated 15 matches for "r_environ_user".
2020 Mar 19
2
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
...aths()"
[1] "/home/hb/software/R-devel/trunk/lib/R/library"
?
The long version:
R_LIBS_SITE='no_such_dir' and R_LIBS_USER='' is set up at the very
end of tools:::setRlibs():
setRlibs <-
...
c(paste0("R_LIBS=", rlibs),
if(WINDOWS) " R_ENVIRON_USER='no_such_file'" else "R_ENVIRON_USER=''",
if(WINDOWS) " R_LIBS_USER='no_such_dir'" else "R_LIBS_USER=''",
" R_LIBS_SITE='no_such_dir'")
}
Monitoring with 'pstree' confirms this. On Linux with R...
2020 Mar 19
1
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
...|
> | ?
> |
> | The long version:
> |
> | R_LIBS_SITE='no_such_dir' and R_LIBS_USER='' is set up at the very
> | end of tools:::setRlibs():
> |
> | setRlibs <-
> | ...
> | c(paste0("R_LIBS=", rlibs),
> | if(WINDOWS) " R_ENVIRON_USER='no_such_file'" else "R_ENVIRON_USER=''",
> | if(WINDOWS) " R_LIBS_USER='no_such_dir'" else "R_LIBS_USER=''",
> | " R_LIBS_SITE='no_such_dir'")
> | }
> |
> | Monitoring with 'pstree...
2020 Mar 19
0
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
...home/hb/software/R-devel/trunk/lib/R/library"
|
| ?
|
| The long version:
|
| R_LIBS_SITE='no_such_dir' and R_LIBS_USER='' is set up at the very
| end of tools:::setRlibs():
|
| setRlibs <-
| ...
| c(paste0("R_LIBS=", rlibs),
| if(WINDOWS) " R_ENVIRON_USER='no_such_file'" else "R_ENVIRON_USER=''",
| if(WINDOWS) " R_LIBS_USER='no_such_dir'" else "R_LIBS_USER=''",
| " R_LIBS_SITE='no_such_dir'")
| }
|
| Monitoring with 'pstree' confirms this. On Li...
2011 Jun 27
1
R CMD check --force-multiarch does not install all the archs for testing
...ame space can be loaded with stated
dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ...Warning: running
command '"D:/biocbld/bbs-2.9-bioc/R/bin/x64/Rterm.exe"
R_ENVIRON_USER='no_such_file' --no-site-file --no-init-file --no-save
--no-restore --slave -f
D:\biocbld\bbs-2.9-bioc\tmpdir\RtmpO65p5H\Rin57456988' had status 1
ERROR
Error: package 'fabia' is not installed for 'arch=x64'
Execution halted
It looks like this package has a loading...
2017 Apr 06
3
failure of make check-all
...< [41] "QT_ACCESSIBILITY" "QT_IM_MODULE"
< [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH"
< [45] "R_BROWSER" "R_BZIPCMD"
< [47] "R_CMD" "R_DOC_DIR"
< [49] "R_ENVIRON" "R_ENVIRON_USER"
< [51] "R_GZIPCMD" "R_HOME"
< [53] "R_INCLUDE_DIR" "R_LIBS"
< [55] "R_LIBS_SITE" "R_LIBS_USER"
< [57] "R_OSTYPE" "R_PAPERSIZE"
< [59] "R_PAPERSIZE_USER" "R_PDFVIEW...
2017 Apr 06
0
failure of make check-all
...] "QT_ACCESSIBILITY" "QT_IM_MODULE"
> < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH"
> < [45] "R_BROWSER" "R_BZIPCMD"
> < [47] "R_CMD" "R_DOC_DIR"
> < [49] "R_ENVIRON" "R_ENVIRON_USER"
> < [51] "R_GZIPCMD" "R_HOME"
> < [53] "R_INCLUDE_DIR" "R_LIBS"
> < [55] "R_LIBS_SITE" "R_LIBS_USER"
> < [57] "R_OSTYPE" "R_PAPERSIZE"
> < [59] "R_PAPERSIZE_USER"...
2012 Mar 02
0
devtools 0.6
...g R files, the cache will be
automatically cleared so that all files are loaded again next time you try
(Fixes #55)
* functions that run R now do so with `R_LIBS` set to the current
`.libPaths()` - this will ensure that checking uses the development library
if you are in development mode. `R_ENVIRON_USER` is set to an empty file to
avoid your existing settings overriding this.
* `load_data` (called by `load_all`) will also load data defined in R files in
the data directory. (Fixes #45)
* `dev_mode` performs some basic tests to make sure you're not setting your
development library to a d...
2012 Mar 02
0
devtools 0.6
...g R files, the cache will be
automatically cleared so that all files are loaded again next time you try
(Fixes #55)
* functions that run R now do so with `R_LIBS` set to the current
`.libPaths()` - this will ensure that checking uses the development library
if you are in development mode. `R_ENVIRON_USER` is set to an empty file to
avoid your existing settings overriding this.
* `load_data` (called by `load_all`) will also load data defined in R files in
the data directory. (Fixes #45)
* `dev_mode` performs some basic tests to make sure you're not setting your
development library to a d...
2015 Aug 14
2
Build R on Haiku
...ackaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences"
export PWD="/Store/buildr/src/library/tools"
export R_DEFAULT_PACKAGES="NULL"
export R_DOC_DIR="/Store/buildr/doc"
export R_ENVIRON=""
export R_ENVIRON_USER=""
export R_HOME="/Store/buildr"
export R_INCLUDE_DIR="/Store/buildr/include"
export R_PROFILE=""
export R_PROFILE_USER=""
export R_SHARE_DIR="/Store/buildr/share"
export SAFEMODE="no"
export SED="/bin/sed"
export SHLVL...
2017 Sep 16
1
R_LIBS_USER not in libPaths
I have not intentionally set R_LIBS_USER. I looked for an Renviron.site
file but did not see it in R/etc or my home directory. The strange part is
that if I print Sud.getenv I see a value for R_LIBS_USER. However, this
directory is not showing under libPaths.
I though .libPaths should contain R_LIBS_USER.
I also noticed that R related variables are not in the system or user
variables because I
2015 Aug 31
0
Build R on Haiku
...nfig/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences"
> export PWD="/Store/buildr/src/library/tools"
> export R_DEFAULT_PACKAGES="NULL"
> export R_DOC_DIR="/Store/buildr/doc"
> export R_ENVIRON=""
> export R_ENVIRON_USER=""
> export R_HOME="/Store/buildr"
> export R_INCLUDE_DIR="/Store/buildr/include"
> export R_PROFILE=""
> export R_PROFILE_USER=""
> export R_SHARE_DIR="/Store/buildr/share"
> export SAFEMODE="no"
> export SE...
2008 Oct 20
2
R 2.8.0 is released
...s been changed --
they are no longer allowed, and attempting to create such a
string now gives a truncation warning (unless
options("warnEscapes") is false).
o The user environment and profile files can now be specified via
environment variables 'R_ENVIRON_USER' and 'R_PROFILE_USER',
respectively.
o ?pkg::topic and ?pkg:::topic now find help on 'topic' from
package 'pkg' (and not help on :: or :::).
o ??topic now does help.search("topic"); variations such as
??pkg::topic or field?...
2008 Oct 20
2
R 2.8.0 is released
...s been changed --
they are no longer allowed, and attempting to create such a
string now gives a truncation warning (unless
options("warnEscapes") is false).
o The user environment and profile files can now be specified via
environment variables 'R_ENVIRON_USER' and 'R_PROFILE_USER',
respectively.
o ?pkg::topic and ?pkg:::topic now find help on 'topic' from
package 'pkg' (and not help on :: or :::).
o ??topic now does help.search("topic"); variations such as
??pkg::topic or field?...
2011 Apr 13
0
R 2.13.0 is released
...e= argument and be consistent
with soft namespace policy for finding objects.
? tools::Rdiff() now has the option to return not only the status
but a character vector of observed differences (which are still
by default sent to stdout).
? The startup environment variables R_ENVIRON_USER, R_ENVIRON,
R_PROFILE_USER and R_PROFILE are now treated more consistently.
In all cases an empty value is considered to be set and will stop
the default being used, and for the last two tilde expansion is
performed on the file name. (Note that setting an empty value is...
2011 Apr 13
0
R 2.13.0 is released
...e= argument and be consistent
with soft namespace policy for finding objects.
? tools::Rdiff() now has the option to return not only the status
but a character vector of observed differences (which are still
by default sent to stdout).
? The startup environment variables R_ENVIRON_USER, R_ENVIRON,
R_PROFILE_USER and R_PROFILE are now treated more consistently.
In all cases an empty value is considered to be set and will stop
the default being used, and for the last two tilde expansion is
performed on the file name. (Note that setting an empty value is...