search for: r_environ

Hi everyone, Two minor points about ?.Renviron. 1) If R_ENVIRON is not set then R defaults to `${R_HOME}/etc/Renviron', not `${R_HOME}/etc/Renviron.site' as stated. 2) In the details, there is a missing "way" in "`value' is processed in a similar to a Unix shell." Cheers, Jonathan. --please do not edit the information below--...

...ook "." off my PATH for security reasons and now find that R does not work in my home directory where the .Renviron file resides. The fix is simple. In the R shell startup section replace ". .Renviron" by ". ./.Renviron". The relevant section is: # Startup if ${USE_R_ENVIRON}; then # use the one in current dir, or default if [ -r .Renviron ] then . ./.Renviron # <<-- change else [ -r ${R_ENVIRON} ] && . ${R_ENVIRON} fi fi -- ----------------------------------------------------------------- Bill Venables, Statistician, CMIS Environmetrics Pr...

...ackages required but not available: WARNING: ignoring environment value of R_HOME Prompt > Any ideas what is going on - as far as I can see the only dependency is to affy which is there and OK... I get no list of packages that are missing :-( I'm assuming the warning comes because I have R_ENVIRON pointing to a .Renviron file in my home directory... Any help would be much appreciated! Cheers, Crispin -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}

...C:\Program Files\R\rw1051\etc\Renviron.site, which contains the line: R_LIBS= "C:/Jim/LocalR-Libraries/FromCran"; "C:/Jim/LocalR-Libraries/Cantata" >From the documentation, I gather that I have put this file in the default location, but to be safe I also explicitly set the R_ENVIRON environment variable. Now I indeed have: R> Sys.getenv("R_ENVIRON") R_ENVIRON "C:\\Progra~1\\R\\rw1051\\etc\\Renviron.site" So, I can't figure out why the libraries indicated in my file don't end up in the library path: >...

Colleagues, I am trying to understand how R (2.12.1) obtains the PATH environment variable in Windows (7 or Vista). Startup {base} directs one to: "R_ENVIRON" -- which equals "" in my systems R_HOME/etc/Renviron.site -- which does not exist Next, it directs to: R_HOME/etc/Rprofile.site -- which also does not exist (the expected behavior in a "factory-fresh" installation) I found the following files in R_HOME/etc: Makeconf R...

How can I access a function created in one data directory in another? I have been sourcing the text file that contains the function each time I go to another data dir. This is cumbersome, and I suspect there is a way to make functions global. Thanks in advance, S. David White Dept of Speech and Hearing Science Ohio State University Columbus, Ohio

When I install a new version of R (Windows XP) I have to: 1. copy my rw....\etc\Rprofile.site file to the new installation 2. copy the rw....\share\texmf files to the tex subfolder of the miktex root directory and then refresh the miktex name database (I have a batch file that does this for me which I run whenever I install a new version of R.) 3. setup the shortcut key using

...nder Unix-alikes. o sys.save.image() now closes all connections so it will work even if the connection list has become full. o loess() had an unstated limit of four predictors: this is now documented and enforced. o ${R_HOME}/etc/Renviron.site is now not read if R_ENVIRON is set, as documented. Previously it was read unless R_ENVIRON pointed to an actual file. o Startup.Rd described the proceesing under Unix-alikes but incorrectly implied it happened that way on the Windows and MacOS ports. Neither use Renviron.site, for exam...

...nder Unix-alikes. o sys.save.image() now closes all connections so it will work even if the connection list has become full. o loess() had an unstated limit of four predictors: this is now documented and enforced. o ${R_HOME}/etc/Renviron.site is now not read if R_ENVIRON is set, as documented. Previously it was read unless R_ENVIRON pointed to an actual file. o Startup.Rd described the proceesing under Unix-alikes but incorrectly implied it happened that way on the Windows and MacOS ports. Neither use Renviron.site, for exam...

...t;QT4_IM_MODULE" < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE" < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" < [45] "R_BROWSER" "R_BZIPCMD" < [47] "R_CMD" "R_DOC_DIR" < [49] "R_ENVIRON" "R_ENVIRON_USER" < [51] "R_GZIPCMD" "R_HOME" < [53] "R_INCLUDE_DIR" "R_LIBS" < [55] "R_LIBS_SITE" "R_LIBS_USER" < [57] "R_OSTYPE" "R_PAPERSIZE" < [59] "R_PAPERSIZE...

..." > < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE" > < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" > < [45] "R_BROWSER" "R_BZIPCMD" > < [47] "R_CMD" "R_DOC_DIR" > < [49] "R_ENVIRON" "R_ENVIRON_USER" > < [51] "R_GZIPCMD" "R_HOME" > < [53] "R_INCLUDE_DIR" "R_LIBS" > < [55] "R_LIBS_SITE" "R_LIBS_USER" > < [57] "R_OSTYPE" "R_PAPERSIZE" > < [59] &q...

On Debian/Ubuntu, system wide environment variables and options are set in respectively /etc/R/Renviron.site and /etc/R/Rprofile.site. These files are automatically created when r-base is installed, and do not get overwritten during an upgrade. On Fedora, there is no /etc/R directory. What is the recommended place to define system wide environment variables and options on a Fedora system?

...quot;.:/boot/home/config/non-packaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences" export PWD="/Store/buildr/src/library/tools" export R_DEFAULT_PACKAGES="NULL" export R_DOC_DIR="/Store/buildr/doc" export R_ENVIRON="" export R_ENVIRON_USER="" export R_HOME="/Store/buildr" export R_INCLUDE_DIR="/Store/buildr/include" export R_PROFILE="" export R_PROFILE_USER="" export R_SHARE_DIR="/Store/buildr/share" export SAFEMODE="no" export SE...

...nfig/non-packaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences" > export PWD="/Store/buildr/src/library/tools" > export R_DEFAULT_PACKAGES="NULL" > export R_DOC_DIR="/Store/buildr/doc" > export R_ENVIRON="" > export R_ENVIRON_USER="" > export R_HOME="/Store/buildr" > export R_INCLUDE_DIR="/Store/buildr/include" > export R_PROFILE="" > export R_PROFILE_USER="" > export R_SHARE_DIR="/Store/buildr/share" > expor...

I knew I could work around. But this shouldn't happen. And yes. Same problem with your example. blurfle$ R --vanilla R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain

...libp, collapse = .Platform$path.sep) + else "" # character(0) is invalid for Sys.setenv() + } > Sys.setenv(R_LIBS = .R_LIBS() # for build.pkg() & install.packages() + , R_BUILD_ENVIRON = "nothing" # avoid ~/.R/build.environ which might set R_LIBS + , R_ENVIRON = "none" + , R_PROFILE = "none" + ) > > ## PR 1271 detach("package:base") crashes R. > tools::assertError(detach("package:base")) > > > ## invalid 'lib.loc' > stopifnot(length(installed.packages("mgcv&...

...e= argument and be consistent with soft namespace policy for finding objects. ? tools::Rdiff() now has the option to return not only the status but a character vector of observed differences (which are still by default sent to stdout). ? The startup environment variables R_ENVIRON_USER, R_ENVIRON, R_PROFILE_USER and R_PROFILE are now treated more consistently. In all cases an empty value is considered to be set and will stop the default being used, and for the last two tilde expansion is performed on the file name. (Note that setting an empty value i...

...e= argument and be consistent with soft namespace policy for finding objects. ? tools::Rdiff() now has the option to return not only the status but a character vector of observed differences (which are still by default sent to stdout). ? The startup environment variables R_ENVIRON_USER, R_ENVIRON, R_PROFILE_USER and R_PROFILE are now treated more consistently. In all cases an empty value is considered to be set and will stop the default being used, and for the last two tilde expansion is performed on the file name. (Note that setting an empty value i...