search for: r2spec

Displaying 20 results from an estimated 22 matches for "r2spec".

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2020 Aug 10
2
R2spec woes
I tried R2spec to create the spec files necessary to have Rcpparmadillo. I noticed that it has some issues, one example is that it placed some files irrespectively if they were present in the tar or not. One functionality that I think it would be nice to have would to update a given spec file with the updated...
2012 Mar 12
2
Trying to use current R2spec on RHEL.
Is there somewhere a succinct guide to just how much extra crud we need to install on RHEL to make use of EPEL packages? [root at troll-1 noarch]# rpm -ivh R2spec-4.1.0-1.el6.noarch.rpm error: Failed dependencies: fedora-packager is needed by R2spec-4.1.0-1.el6.noarch [root at troll-1 noarch]# wget http://dl.fedoraproject.org/pub/epel/6/x86_64/fedora-packager-0.5.9.4-1.el6.noarch.rpm [...] [root at troll-1 noarch]# rpm -ivh fedora-packager-0.5.9....
2020 Aug 11
2
R2spec woes
On Tue, 11 Aug 2020 at 02:35, Elliott Sales de Andrade <quantum.analyst at gmail.com> wrote: > > Hi Jos?, > > On Mon, 10 Aug 2020 at 11:20, Jos? Ab?lio Matos <jamatos at fc.up.pt> wrote: > > > > I tried R2spec to create the spec files necessary to have Rcpparmadillo. > > > > I noticed that it has some issues, one example is that it placed some files > > irrespectively if they were present in the tar or not. > > > > I would like to update this, but I'd also like to grab J...
2020 Aug 11
0
R2spec woes
Hi Jos?, On Mon, 10 Aug 2020 at 11:20, Jos? Ab?lio Matos <jamatos at fc.up.pt> wrote: > > I tried R2spec to create the spec files necessary to have Rcpparmadillo. > > I noticed that it has some issues, one example is that it placed some files > irrespectively if they were present in the tar or not. > I would like to update this, but I'd also like to grab Jason's preliminary R macr...
2015 Jun 03
6
creating RPMs from CRAN tarballs
This is not specifically a CentOS question, but I am creating RPMS for CentOS 6 from some CRAN tarballs. I run R2spec -s tarball to create a spec file, and most of the time it works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has test or example programs that start with #!/usr/bin/r with lower case r, and the resulting package then winds up with a dependency on /usr/bin/r, which can't be...
2009 Jan 04
0
How to predict the files installed ?
Dear list(s), Several people are actually really interested to package the CRAN or Bioconductor in RPM using R2spec. One of the features that R2spec should handle is the %file section of the spec file, to handle it I would like to be able to predict which files are installed while running the `R CMD INSTALL package_name` command from the tarball directly. I could always make R2spec compiling the spec files bu...
2017 Oct 30
2
R: dplyr, doBy, and ggplot2 in CentOS7
...> cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what > > packages in CentOS 7 I need for dplyr, doBy, and ggplot2? > > > > > They are not in the CentOS or epel distros. I have built both dplyr and > ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from > epell) and rpmbuild. They both require building several other R packages, > and a bit of tweaking to the %files portion of the spec file, but are > doable. I've never tried doBy or caret. > Feel free to contact me directly for more information, Thanks for the reply. At lea...
2017 Oct 30
2
R: dplyr, doBy, and ggplot2 in CentOS7
I have a R script that I am running from python with rpy2. On a debian system I run this: apt-get install R-cran-ggplot2 R-cran-caret And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?
2010 Oct 13
1
Building rpm package for Hmisc on Fedora 12
Hi, I'm trying to get the 'xts' library from CRAN packaged for Fedora 12, and one of its dependencies is 'Hmisc'. I have created a spec file for that using R2spec, but building it fails with something in building the manual pages: Warning: ./man/escapeRegex.Rd:22: unknown macro '\backslash' [similar warnings snipped] Warning: newline within quoted string at rcspline.restate.Rd:21 Warning: ./man/rcspline.restate.Rd:80: unexpected section header '...
2020 May 14
2
R 4.0.0
...ady have other examples of how to do this with less steps. :-) Create macros like %{r_sitearch} %{r_sitelib} that expand with the R version being used and place them in R-rpm-macros and change all the R srpms to use them. We can also contribute changes to srpm generators like https://pagure.io/r2spec. This is a one-time change. Then when a new R version shows up it is enough to bump the release and rebuild the package. With the added advantage that all the cobwebs and dust are cleaned. :-) Another advantage is that the boilerplate code required to create a srpm package decreases. :-) Reg...
2009 Jun 10
0
License quandry in the Fedora sub-space of all R packages
...dora view of the world. I extract those in the troublesome subset up top in this email, and note the complete list of my packaging delendency tree after my signature Let me take a moment, by the way, and commend the fine work of Pierre-YvesChibon [pingou -at- fedoraproject -dot- org] and the R2spec package which he has devised and worked on. It made much of my effort possible. Thanks !! I also have adopted the 'tarball release flattening' approach recommended on the Fedora R mailing list earlier this month, and will probably make a run through the RawHide packagings shortly, fi...
2015 Jun 05
2
creating RPMs from CRAN tarballs
On 6/5/2015 3:09 AM, Peter wrote: > On 06/04/2015 07:49 AM, Tony Schreiner wrote: >> I run R2spec -s tarball to create a spec file, and most of the time it >> works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has >> test or example programs that start with >> >> #!/usr/bin/r >> >> with lower case r, and the resulting package then winds up...
2015 Jun 04
0
creating RPMs from CRAN tarballs
Am 03.06.2015 um 21:49 schrieb Tony Schreiner <anthony.schreiner at bc.edu>: > I run R2spec -s tarball to create a spec file, and most of the time it > works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has > test or example programs that start with > > #!/usr/bin/r > > with lower case r, and the resulting package then winds up with a > dependenc...
2015 Jun 05
0
creating RPMs from CRAN tarballs
On 06/04/2015 07:49 AM, Tony Schreiner wrote: > I run R2spec -s tarball to create a spec file, and most of the time it > works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has > test or example programs that start with > > #!/usr/bin/r > > with lower case r, and the resulting package then winds up with a > dependenc...
2015 Jun 05
1
creating RPMs from CRAN tarballs
On Fri, Jun 5, 2015 at 3:09 AM, Peter <peter at pajamian.dhs.org> wrote: > On 06/04/2015 07:49 AM, Tony Schreiner wrote: > > I run R2spec -s tarball to create a spec file, and most of the time it > > works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has > > test or example programs that start with > > > > #!/usr/bin/r > > > > with lower case r, and the resulting package then wi...
2015 Jun 05
0
creating RPMs from CRAN tarballs
On 06/05/2015 04:11 PM, Bowie Bailey wrote: > On 6/5/2015 3:09 AM, Peter wrote: >> On 06/04/2015 07:49 AM, Tony Schreiner wrote: >>> I run R2spec -s tarball to create a spec file, and most of the time it >>> works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has >>> test or example programs that start with >>> >>> #!/usr/bin/r >>> >>> with lower case r, and the resulti...
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
...to CentOS 7 system. There it > cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what > packages in CentOS 7 I need for dplyr, doBy, and ggplot2? > They are not in the CentOS or epel distros. I have built both dplyr and ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from epell) and rpmbuild. They both require building several other R packages, and a bit of tweaking to the %files portion of the spec file, but are doable. I've never tried doBy or caret. Feel free to contact me directly for more information, Tony Schreiner
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
...t2 or R-cran-caret. Does anyone know what > > > packages in CentOS 7 I need for dplyr, doBy, and ggplot2? > > > > > > > > > They are not in the CentOS or epel distros. I have built both dplyr and > > ggplot2 for CentOS 6 and 7, using the spec file crated by R2spec (from > > epell) and rpmbuild. They both require building several other R packages, > > and a bit of tweaking to the %files portion of the spec file, but are > > doable. I've never tried doBy or caret. > > Feel free to contact me directly for more information, > >...
2020 May 14
0
R 4.0.0
...s with less steps. :-) > > Create macros like > > %{r_sitearch} > %{r_sitelib} > > that expand with the R version being used and place them in R-rpm-macros and > change all the R srpms to use them. We can also contribute changes to srpm > generators like https://pagure.io/r2spec. > > This is a one-time change. > > Then when a new R version shows up it is enough to bump the release and > rebuild the package. With the added advantage that all the cobwebs and dust > are cleaned. :-) > > Another advantage is that the boilerplate code required to create...
2010 Feb 14
0
R CMD INSTALL customization; followup on Dirk's question
...package builds then package them up. Most packages do work without customization, after all. If a package fails, I can always look into it later and customize the build for it, but I don't want to take the "boutique" approach implicit in existing packaging efforts for RPMs (such as R2spec). I admire what Dirk did with cran2deb and if I had a research assistant, I'd imitate that approach to make automatic RPMS for all R packages and customize steps for packages that fail. Did you ever use "checkinstall"? It is a way to 'cheat' while making RPM packages. If y...