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2018 Feb 19
2
[parallel] fixes load balancing of parLapplyLB
...ff using bootstrapped data, so for the original there is more data and I show the arithmetic mean with standard deviation. The confirmation with the patched R was only a single instance of that series of jobs. > > ## Job Efficiency > > The job efficiency is defined as (this is what the `qacct-efficiency` tool below does): > > ``` > efficiency = cputime / cores / wallclocktime * 100% > ``` > > In simpler words: how well did the job utilize its CPU cores. It shows the percentage of time the job was actually doing stuff, as opposed to the difference: > > ``` > wa...
2018 Feb 19
0
[parallel] fixes load balancing of parLapplyLB
...doing the same stuff using bootstrapped data, so for the original there is more data and I show the arithmetic mean with standard deviation. The confirmation with the patched R was only a single instance of that series of jobs. ## Job Efficiency The job efficiency is defined as (this is what the `qacct-efficiency` tool below does): ``` efficiency = cputime / cores / wallclocktime * 100% ``` In simpler words: how well did the job utilize its CPU cores. It shows the percentage of time the job was actually doing stuff, as opposed to the difference: ``` wasted = 100% - efficiency ``` ... which, e...
2018 Feb 12
2
[parallel] fixes load balancing of parLapplyLB
Dear R-Devel List, **TL;DR:** The function **parLapplyLB** of the parallel package has [reportedly][1] (see also attached RRD output) not been doing its job, i.e. not actually balancing the load. My colleague Dirk Sarpe and I found the cause of the problem and we also have a patch to fix it (attached). A similar fix has also been provided [here][2]. [1]:
2018 Feb 26
2
[parallel] fixes load balancing of parLapplyLB
...l there is more data >> and I show the arithmetic mean with standard deviation. The >> confirmation with the patched R was only a single instance of that >> series of jobs. >>> ## Job Efficiency >>> >>> The job efficiency is defined as (this is what the `qacct-efficiency` >> tool below does): >>> ``` >>> efficiency = cputime / cores / wallclocktime * 100% >>> ``` >>> >>> In simpler words: how well did the job utilize its CPU cores. It >> shows the percentage of time the job was actually doing stuff...
2018 Feb 20
0
[parallel] fixes load balancing of parLapplyLB
...so for the original there is more data >and I show the arithmetic mean with standard deviation. The >confirmation with the patched R was only a single instance of that >series of jobs. >> >> ## Job Efficiency >> >> The job efficiency is defined as (this is what the `qacct-efficiency` >tool below does): >> >> ``` >> efficiency = cputime / cores / wallclocktime * 100% >> ``` >> >> In simpler words: how well did the job utilize its CPU cores. It >shows the percentage of time the job was actually doing stuff, as >opposed to t...
2018 Mar 01
0
[parallel] fixes load balancing of parLapplyLB
...;>> and I show the arithmetic mean with standard deviation. The >>> confirmation with the patched R was only a single instance of that >>> series of jobs. >>>> ## Job Efficiency >>>> >>>> The job efficiency is defined as (this is what the `qacct-efficiency` >>> tool below does): >>>> ``` >>>> efficiency = cputime / cores / wallclocktime * 100% >>>> ``` >>>> >>>> In simpler words: how well did the job utilize its CPU cores. It >>> shows the percentage of time the...