Displaying 6 results from an estimated 6 matches for "protein_ids".
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protein_id
2012 Jan 24
1
gsub semicolon with double quotation mark
...ppose to look like that:
I have:
FBpp0070086;FBpp0099643;FBpp0112915
I would like to have:
"FBpp0070086","FBpp0099643","FBpp0112915"
I tried with various numbers of backslashes, but noe have worked.
for example:
gsub(";", "\\\",\"", data$protein_ids)
gsub(";", "\\",\"", data$protein_ids)
gsub(";", "\",\"", data$protein_ids)
gsub(";", "\\',\\'", data$protein_ids)
gsub(";", '"',data$protein_ids)
What do I miss?
Thanks
Assa
[[alterna...
2018 Jul 09
2
Parametrized Vignettest in R packages
Dear Duncan,
Following your advice (Thank you for it) I did include into the vignettes
params:
configuration: !r get(data(sample_analysis))
data: !r get(data(skylineconfig))
And everything seemed (see below) to work fine.
devtools::build_vignettes() builds the vignettes.
Runs with NO error. By this the .Rmd file, html file and corresponding
.R files is being placed into the inst/doc
2018 Jul 09
3
Parametrized Vignettest in R packages
So far you haven't provided a reproducible example yet. I wonder what
exactly the object `sample_analysis` is. Sounds like it is an
environment. If that is the case, devtools::build_vignettes() will
tangle (for the meaning of "tangle", see ?tools::buildVignette) your
vignette into an invalid R script. Environments cannot be represented
via dput(), so knitr's purl() (eventually
2018 Jul 09
0
Parametrized Vignettest in R packages
On 09/07/2018 8:49 AM, Witold E Wolski wrote:
> Dear Duncan,
>
> Following your advice (Thank you for it) I did include into the vignettes
> params:
> configuration: !r get(data(sample_analysis))
> data: !r get(data(skylineconfig))
>
> And everything seemed (see below) to work fine.
> devtools::build_vignettes() builds the vignettes.
>
> Runs with NO
2018 Jul 09
0
Parametrized Vignettest in R packages
Dear Yihui,
Thank you for the valuable questions.
sample_analysis is a "tibble" while
configuration is an "R6" class.
But I also have parametrized reports where I pass R reference classes
as arguments.
This is the Rmd yaml params part corresponding to the error message.
params:
configuration: !r get(data(skylineconfig))
data: !r get(data(sample_analysis))
Might the R6
2018 Jul 02
2
Parametrized Vignettest in R packages
Hello,
Thank you for the questions as well as remaining me of the default
parameters in the yaml session.
Indeed this seems to be the solution.
But how would I assign package data as a default parameter?
So originally I thought to render the markdown with :
<code>
data(sample_analysis)
data(skylineconfig)
x <- rmarkdown::render("report.Rmd", output_format =