search for: protein_ids

Displaying 6 results from an estimated 6 matches for "protein_ids".

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2012 Jan 24
1
gsub semicolon with double quotation mark
...ppose to look like that: I have: FBpp0070086;FBpp0099643;FBpp0112915 I would like to have: "FBpp0070086","FBpp0099643","FBpp0112915" I tried with various numbers of backslashes, but noe have worked. for example: gsub(";", "\\\",\"", data$protein_ids) gsub(";", "\\",\"", data$protein_ids) gsub(";", "\",\"", data$protein_ids) gsub(";", "\\',\\'", data$protein_ids) gsub(";", '"',data$protein_ids) What do I miss? Thanks Assa [[alterna...
2018 Jul 09
2
Parametrized Vignettest in R packages
Dear Duncan, Following your advice (Thank you for it) I did include into the vignettes params: configuration: !r get(data(sample_analysis)) data: !r get(data(skylineconfig)) And everything seemed (see below) to work fine. devtools::build_vignettes() builds the vignettes. Runs with NO error. By this the .Rmd file, html file and corresponding .R files is being placed into the inst/doc
2018 Jul 09
3
Parametrized Vignettest in R packages
So far you haven't provided a reproducible example yet. I wonder what exactly the object `sample_analysis` is. Sounds like it is an environment. If that is the case, devtools::build_vignettes() will tangle (for the meaning of "tangle", see ?tools::buildVignette) your vignette into an invalid R script. Environments cannot be represented via dput(), so knitr's purl() (eventually
2018 Jul 09
0
Parametrized Vignettest in R packages
On 09/07/2018 8:49 AM, Witold E Wolski wrote: > Dear Duncan, > > Following your advice (Thank you for it) I did include into the vignettes > params: > configuration: !r get(data(sample_analysis)) > data: !r get(data(skylineconfig)) > > And everything seemed (see below) to work fine. > devtools::build_vignettes() builds the vignettes. > > Runs with NO
2018 Jul 09
0
Parametrized Vignettest in R packages
Dear Yihui, Thank you for the valuable questions. sample_analysis is a "tibble" while configuration is an "R6" class. But I also have parametrized reports where I pass R reference classes as arguments. This is the Rmd yaml params part corresponding to the error message. params: configuration: !r get(data(skylineconfig)) data: !r get(data(sample_analysis)) Might the R6
2018 Jul 02
2
Parametrized Vignettest in R packages
Hello, Thank you for the questions as well as remaining me of the default parameters in the yaml session. Indeed this seems to be the solution. But how would I assign package data as a default parameter? So originally I thought to render the markdown with : <code> data(sample_analysis) data(skylineconfig) x <- rmarkdown::render("report.Rmd", output_format =