Displaying 1 result from an estimated 1 matches for "profidst".
Did you mean:
probdist
2012 Apr 11
0
phangorn and calculation of a rate matrix
Hi, I'm trying to calculate a ratematrix for a RNA aligment (U instead of T)
in order to use it as a ratematrix in Profidst (a phylogenetic program which
takes into account both the primary sequence and the secondary structure of
the RNA, in my case rRNA). The sequence-structure aligment has been made in
4SALE (a java app) and saved as one-letter encoded (using a 12 letters
alphabet, "a","c","d&...