Displaying 1 result from an estimated 1 matches for "procrustes_object".
2012 May 23
1
procrustes (vegan) plot of residual differences
Hello
This is a simple question but I couldn't google an answer.
In the procrustes function of the vegan package, one uses
plot(procrustes_object, kind=2) to obtain a plot of the residual
differences. For instance:
data(varespec)
vare.dist <- vegdist(wisconsin(varespec))
library(MASS)
mds.null <- isoMDS(vare.dist, tol=1e-7)
mds.alt <- isoMDS(vare.dist, initMDS(vare.dist), maxit=200, tol=1e-7)
vare.proc <- procrustes(mds...