search for: processwsdl

Dear all, I've been trying on and off for the past few months to get SSOAP to work with chemspider. First I tried the WSDL file: cs<-processWSDL("http://www.chemspider.com/MassSpecAPI.asmx?WSDL") Error in parse(text = paste(txt, collapse = "\n")) : <text>:1:29: unexpected input 1: function(x, ..., obj = new( ? ^ In addition: Warning message: In processWSDL("http://www.chemspid...

...and here are the version numbers: R: 2.9.2 SSOAP: 0.5-3 XMLSchema: 0.1-1 XML: 2.6-0 The packages are up to date as per "Update packages". I tried all the examples that came under library/SSOAP/examples directory and most failed during genSOAPClientInterface(), while one failed right in processWSDL(). This is the most common error during genSOAPClientInterface(): Error in paste(" .elementFormQualified", .elementFormQualified, sep = " = ") : no slot of name "elementFormQualified" for this object of class "SchemaTypes" There was only one reference to...

...r: evaluation nested too deeply: infinite recursion / options(expressions=)?". I tried different "action" values, because I don't know what I should put there. But I always get the same error. Also, FYI, the following command produces the following output: smg8Def <- processWSDL("http://smg8.ulb.ac.be:8080/axis2/services/Version?wsdl", verbose=TRUE) processing (sub) schema http://axisversion.sample 1 ) Exception 2 ) Exception 3 ) getVersionResponse Warning message: In processWSDL("http://smg8.ulb.ac.be:8080/axis2/services/Version?wsdl", : Ignoring a...

Hello, I am a complete newbie to Web Services. I have set up an account to the MSN Developer Services and have acquired a key for Live Search via SOAP. I want to send and receive requests through R. I have already found out that the two packages I need is RCurl and SSOAP. I have installed them but now, as it's evident after long hours of trying, I have absolutely no idea how to use them. Is

Hi, I'm having a bit of trouble using SSOAP to send requests containing complex types. It seems as though processWSDL does not generate functions for converting the generated types into SOAP requests, but it does generate them for converting **from** SOAP requests to the complex types. The error that I get when trying to pass an object of type "LoginReq" (as generated by processWSDL) is that LoginReq do...

...erested in having R be a client and from within R access data on other web services. Specifically the web services I would like to access from within R are “http://water.sdsc.edu/waterOneFlow/NWIS/DailyValues.asmx?WSDL” Therefor, I wrote the following code into R program: > library(SSOAP) > processWSDL("http://water.sdsc.edu/wateroneflow/NWIS/DailyValues.asmx?WSDL", verbose=TRUE) However, this program gave me error messages, like: processing (sub) schema http://www.cuahsi.org/his/1.0/ws/ 1 ) GetValues Error in parse(text = paste(txt, collapse = "\n")) : unexpected input in...

...a bit further, the reason for the error is > that the WSDL *does not have* any <wsdl:types>...</wsdl:types>, I created a local copy and inserted a dummy <wsdl:types>...</wsdl:types> element. Then, my simple snippet works: library(SSOAP) # Hacked local copy w = processWSDL("./MassBank_Instruments") # this breaks genSOAPClientInterface() w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") mobyRequest <- "<moby:MOBY xmlns:moby=\"http://www.biomoby.org/moby\"/>" iface = genSOAP...

...problems with is autogenerated and used similarly by *many* services, it would be quite important to a) fix SSOAP or b) fix the WSDL generator. I am a bit lost how to continue debugging here, any clues or help to get me going ? Thanks in advance, Yours, Steffen The code: library(SSOAP) w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") iface = genSOAPClientInterface(def = w, verbose=TRUE) The output and system info: > library(SSOAP) > > w = processWSDL("http://biomoby.org/services/wsdl/ipb-halle.de/MassBank_Instruments") > ifa...

...oken)) first (and proceeds if the token is NOT character.) I can't test that function since I have no idea how to get the token into "non-character" form :) My code: library(SSOAP) chemspider_sectoken <- "xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx" # (token was here) cs <- processWSDL("http://www.chemspider.com/Search.asmx?WSDL") # intf <- genSOAPClientInterface(,cs) # (this fails, see below. The Mass Spec API is correctly parsed. Therefore by hand:) csidlist <- .SOAP(server=cs@server, method="SimpleSearch", .soapArg...

...as.logical(addAttributeNamespaces), as.logical(useInternalNodes), FALSE, as.logical(isSchema), as.logical(fullNamespaceInfo), as.character(encoding), as.logical(useDotNames), xinclude, error, addFinalizer, PACKAGE = "XML") 2: xmlParse(url) 3: parseSchemaDoc(fileName) 4: processWSDL("http://soap.genome.jp/KEGG.wsdl") 5: fun(libname, pkgname) 6: doTryCatch(return(expr), name, parentenv, handler) 7: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8: tryCatchList(expr, classes, parentenv, handlers) 9: tryCatch(fun(libname, pkgname), error = identity) 10: runHoo...

...e code doesn't actually execute the query, it simply fills in dummy data into the result, so all that you need to try the sample is python 2.6 and ZSI (http://pywebsvcs.sourceforge.net/). The comment also has sample R client code which I am paste below: library(SSOAP) dataService <- processWSDL('C:/src/tmp/python/webserv/dataService/DataService.wsdl') def = genSOAPClientInterface(def = dataService, verbose = TRUE) res = def at functions$simpleQuery('select 1 as One') At this point, my priority is to get the deserialization of the response working, as I am able to...

Dear R folks: I am trying to use SSOAP (version 0.2-2) package in R (version 2.1.0,linux) to access SOAP service on NCBI (http://www.ncbi.nlm.nih.gov) its WSDL file is at http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl but some errors occured: > ncbi <- processWSDL("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl") > ff <- genSOAPClientInterface(ncbi at operations[[1]], def = ncbi, ncbi at name, verbose=FALSE) > ff at functions$run_eInfo("db=pubmed") Error in toSOAPArray(obj, con, type = type) : no slot of name...

i don't know perl,but on server site,they give soap:lite using perl , go to--->http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html i want to download data from kegg server ,using R only, how to proceed? & what is mean by SOAP client driver ? also go to http://soap.genome.jp/KEGG.wsdl -- View this message in context:

...t;RCurl"), ssl.verifypeer = FALSE)) curlSetOpt(.opts = list(proxy = 'proxyserver:port'), curl = curl) wsdl <- getURL("XXXXXX.asmx?wsdl", ssl.verifypeer = FALSE) doc <- xmlInternalTreeParse(wsdl) def <- processWSDL(doc) ff <- genSOAPClientInterface(def = def) # Create the BatchMessage Array above bm <- new("BatchMessage", Message = "XXXX", MessageID = "XXXX",...