search for: probenam

> I have a code that has several probes with the same probename. When I define the probe to use a translator and then try to match for all the occurances of the probename in a D script I get the following error: > > dtrace: invalid probe specifier mpi__test$target:::RECV_REQ_ACT_EV { printf("%d %d", args[0]->bar, args[0]->baz); }: in ac...

Dear All, I am analyzing the miRNA data set in which I have 817 unique probes for each they have 20 features each . I have to group the similar features and take the median across them so that I have a data with no repeats to perform invariant analysis . My data looks something similar format probename sample1 sample2 sample3 A 2.3 2.4 2.5 A 8.9 3.6 7.9 A 4.7 4.4 2.2 C 2.2 2.1 2.3 C 1.3 1.3 2.9 B 2.2 2.1 2...

...> > > > I am having a set of human oligo ids (H200006022 H200002025 H300004703 > > H200000442 H200005719 H300018350) which I want to map to Ensembl or > RefSeq. > > I am sure R has a function to do that. I downloaded the {oligo} package > and > > tried to use the probeNames function. Although the factor of ologo ids is > an > > object (as the argument to probeNames should be) I retrieve the following > > error: > > probeNames(significant_genes[,1]) > > Error in function (classes, fdef, mtable) : > > unable to find an inherited met...

[Perhaps someone could rename this list to dtrace-matt-problems-discuss?] If I run this script against my binary (which contains a USDT probe called ''concurrentq-latency''): ::: / probename == "concurrentq-latency" / { printf("[%s]:[%s]:[%s]\n", probeprov, probefunc, probename); } I get this output: dtrace: script ''testq.d'' matched 46056 probes dtrace: pid 26257 has exited CPU ID FUNCTION:NAME 2 46076 dequeue_thread:c...

Dear list, I am having a set of human oligo ids (H200006022 H200002025 H300004703 H200000442 H200005719 H300018350) which I want to map to Ensembl or RefSeq. I am sure R has a function to do that. I downloaded the {oligo} package and tried to use the probeNames function. Although the factor of ologo ids is an object (as the argument to probeNames should be) I retrieve the following error: probeNames(significant_genes[,1]) Error in function (classes, fdef, mtable) : unable to find an inherited method for function "probeNames", for signature...

...modules alone (by excluding the 3rd party and system libraries). I tried the below script without success. The conditional given in the predicate is not taking effect. Why is this so ? $ dtrace -ln ''pid$target::: /probemod!="libc.so.1"/ { printf("%s ----- %s",probefunc, probename); } '' -p `pgrep a.out` Similar is the case for the below script, I expect only the entry points to be printed but all the probes in a.out are being printed. $ dtrace -ln ''pid$target:a.out:: /probename=="entry"/ { printf("%s ----- %s",probefunc, probename); }...

Dear R-Helpers, I have a data.frame (df) and the head of data.frame looks like ProbeUID ControlType ProbeName GeneName SystematicName 1665 1577 0 pSysX_50_22_1 pSysX_50 pSysX_50 5422 5147 0 pSysX_49_8_1 pSysX_49 pSysX_49 4042 3843 0 pSysX_51_18_1 pSysX_51 pSysX_51 3646 3466 0 sll1514_0_2 sll1514 sll1514 2946 2807...

When somebody is hammering on the system, I want to be able to detect who''s doing it, and hopefully even what they''re doing. I can''t seem to find any way to do that. Any suggestions? Everything I can find ... iostat, nfsstat, etc ... AFAIK, just show me performance statistics and so forth. I''m looking for something more granular. Either *who* the

Hi i''m trying to write my first dtrace script apparently i bit off a bit more than i can chew, i want to track io over sockets, i found your socketsize.d that gave me how to track writes, but i''m at a loss how to track reads, frankly i don''t see how your write tracker works because it uses a probe in a function that only takes two arguments but you grab size of write

on Solaris 10 5.10 Generic_118822-23 sun4v sparc SUNW,Sun-Fire-T200 I run #iostat -xn 5 to monitor the IO statistics on SF T2000 server. The system also have a heavy IO load, for some reason iostat donot refresh (no any update). It seems like iostat is calling pause() and stucked there. Also my HBA driver''s interrupt stack trace indicates there is a lot of swtch(), the overall IOPS

...ger" idx<-which(cnames=="Col") column.classes[idx]="integer" idx<-which(cnames=="ControlType") column.classes[idx]="integer" idx<-which(cnames=="ProbeName") column.classes[idx]="character" idx<-which(cnames=="GeneName") column.classes[idx]="character" idx<-which(cnames=="SystematicName") column.cl...

An embedded and charset-unspecified text was scrubbed... Name: not available URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20091126/6366832d/attachment-0001.pl>

Tracing Fans, I know it''s been a long time in coming but the CPU Performance Counter (CPC) provider is almost here! The code is currently in for review and a proposed architecture document is attached here for review. Any and all feedback/questions on the proposed implementation is welcome. Thanks. Jon. -------------- next part -------------- An embedded and charset-unspecified text

...ges, setting my PATH thus that /usr/bin/python (2.4) will be used instead of mine and even tracing Python''s execution with this dtrace script: #!/usr/sbin/dtrace -ZCs #pragma D option quiet python588:::function-entry,python588:::function-return { printf("%s %s (%s:%d)\n", probename == "function-entry" ? "->" : "<-", copyinstr(arg1), copyinstr(arg0), arg2); } I had a hard time understanding what I was seeing because it seems ''xm'' asks some services from an HTTP based RPC server, and I was unable to understand...

...1); write(fd,value,strlen(value)); } } //////////////////////////////////////// and the dtrace script (write.d) is: syscall::write:entry, fbt::write:entry, pid$1::write:entry, pid$1::write:return, pid$1::_write:entry /pid==$1/ { printf("%s:%s:%s:%s\n",probeprov,probemod,probefunc,probename); stack(100); ustack(100); } /////////////////////////////// when runs the script, the result is : pid17632:libc.so.1:write:entry libc.so.1`write a.out`main+0x43 a.out`_start+0x7a pid17632:libc.so.1:_write:entry [b] libc.so.1`_write...

I have CEL files from Affymetrix Mouse Array 430_2 and am trying to get the the individual PM intensities (11 per gene) for each sample. I would like to write out this into a tab delimited text file. Where am I stalling? This is what I've done: Change dir(to where CEL files are saved) Data <- ReadAffy() eset <- rma(Data) write.exprs(eset, file="mydata.txt") With this I am

Hi, I am profiling some workloads for the voluntary and involuntary context switches. I am interested in finding out the reasons causing these two types of context switches. As far as I understand, involuntary context switch happens on expiration of time slice or when a higher priority process comes in. While the voluntary switch generally happens when a process is waiting for I/O etc. So to

Hiya, I''m trying to track down some throughput latency that our customer seems to be attributing to our product, I can''t see what he''s talking about, but I want to try and get some deeper granularity than I might get with something like smokeping, and maybe even see if its down to something tunable on our end. I''ve been looking for some examples on how

I just had a quick play with gzip compression on a filesystem and the result was the machine grinding to a halt while copying some large (.wav) files to it from another filesystem in the same pool. The system became very unresponsive, taking several seconds to echo keystrokes. The box is a maxed out AMD QuadFX, so it should have plenty of grunt for this. Comments? Ian