Displaying 7 results from an estimated 7 matches for "possibleextends".
2009 Oct 22
1
S4 object??
...names=1)
ExpressionData <- as.matrix(data[,c(2,3,4,6,7,8)])
eset <- new("ExpressionSet", exprs = ExpressionData)
design <- cbind(WT=1,P=c(0,1,1,0,1,1),G=c(0,1,0,0,1,0))
fit <- lmFit(eset,design)
But I keep getting an eroor message after "lmFit" that says:
Error in possibleExtends(cl, class2, class1Def, class2Def) :
trying to get slot "subclasses" from an object (class "classRepresentation") that is not an S4 object
I am using R-2.9.2. Whats happening now? I have done exactly the same commands in another computer and it works fine. I forgot which R ve...
2015 Jan 21
2
reducing redundant work in methods package
...nomicRanges); print(.count)
# Try this to capture the input and output of a set of functions you wish
to refactor
.init_test_data_collection <- function(ns = asNamespace("methods")) {
funs = c("isClassUnion", "getClass", "genericForPrimitive",
"possibleExtends", ".dataSlot", ".requirePackage", ".classEnv",
"getClassDef", "outerLabels", ".getClassFromCache", "getFunction")
message(paste0("\nCollecting data for unit tests on ", paste(funs,
collapse=", "), &q...
2015 Jan 21
2
reducing redundant work in methods package
...he input and output of a set of functions you wish
>> to refactor
>>
>> .init_test_data_collection <- function(ns = asNamespace("methods")) {
>>
>> funs = c("isClassUnion", "getClass", "genericForPrimitive",
>> "possibleExtends", ".dataSlot", ".requirePackage", ".classEnv",
>> "getClassDef", "outerLabels", ".getClassFromCache", "getFunction")
>>
>> message(paste0("\nCollecting data for unit tests on ", paste(funs,
&g...
2008 Aug 21
1
rc note, etc
....98e-06
OK
....
checking package 'methods'
....
* checking R code for possible problems ... NOTE
browseAll: no visible binding for global variable ?.BrowserStack?
..dataPartReplace2: no visible binding for global variable ?THISCLASS?
...First.lib: no visible binding for global variable ?.possibleExtends?
...First.lib: no visible binding for global variable ?.makeGeneric?
...First.lib: no visible binding for global variable
?.newClassRepresentation?
...First.lib: no visible binding for global variable
?..mergeClassDefSlots?
..makeBasicFuns: no visible global function definition for
?.addBa...
2015 Jan 21
0
reducing redundant work in methods package
...# Try this to capture the input and output of a set of functions you wish
> to refactor
>
> .init_test_data_collection <- function(ns = asNamespace("methods")) {
>
> funs = c("isClassUnion", "getClass", "genericForPrimitive",
> "possibleExtends", ".dataSlot", ".requirePackage", ".classEnv",
> "getClassDef", "outerLabels", ".getClassFromCache", "getFunction")
>
> message(paste0("\nCollecting data for unit tests on ", paste(funs,
> collapse=...
2004 Aug 25
1
Pixmap problem
Hi,
I'm having trouble writing .pnm images which I think is due to a problem
with my colour space. The pixmap object seems to be looking for 72 of 8
colours (one per cell?) which doesn't seem healthy...
> library(pixmap)
> x <- pixmapIndexed(rep(1:8, 9), nrow=6, col=rainbow(8))
> x
Pixmap image
Type : pixmapIndexed
Size : 6x12
Resolution : 1x1
2015 Jan 22
0
reducing redundant work in methods package
...set of functions you wish
>>> to refactor
>>>
>>> .init_test_data_collection <- function(ns = asNamespace("methods")) {
>>>
>>> funs = c("isClassUnion", "getClass", "genericForPrimitive",
>>> "possibleExtends", ".dataSlot", ".requirePackage", ".classEnv",
>>> "getClassDef", "outerLabels", ".getClassFromCache", "getFunction")
>>>
>>> message(paste0("\nCollecting data for unit tests on ", pa...