Displaying 8 results from an estimated 8 matches for "pop5".
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2011 Nov 29
2
Parameters setting in functions optimization
...portion of
individuals not assigned, coming from very far away.
The function LikeGi reads external tables and it's working as I want
(I've got a similar model on Mathematica).
My "final" function is LogLiketot :
LogLiketot<- function(dist,ms)
{
res <- NULL
for(i in 1:nrow(pop5)){
for(l in 1:nrow(freqvar)){
res <- c(res, pop5[i,l]*log(LikeGi(l,i,dist,ms)))
}
}
return(-sum(res))
}
dist is the mean dispersal distance (0, lots of meters) and ms the
proportion of individuals (0-1).
Of course, I want them to be as low as possible.
I'd...
2006 Jul 13
3
Corrupted Indexes - again...
I am still getting these in my maillog:
Jul 13 07:39:38 pop5.cfu.net dovecot: IMAP(breu at cfu.net): Corrupted index
cache file
/var/spool/mail/filer/storage//cfu.net/b/r/breu/dovecot.index.cache:
invalid record size
Jul 13 09:35:03 pop5.cfu.net dovecot: IMAP(breu at cfu.net): Corrupted index
cache file
/var/spool/mail/filer/storage//cfu.net/b/r/breu/do...
2006 Feb 21
2
indexing within panels in xyplot
...fit for subsequent plotting. This hopefully shows the idea:
---<---------------cut here---------------start-------------->---
toydf <- expand.grid(1:100, c("A", "B"),
c("pop1", "pop2", "pop3", "pop4", "pop5"))
toydf <- data.frame(facA = toydf[[3]], facB = toydf[[2]],
x = toydf[[1]], y = rnorm(1000))
xyplot(y ~ x | facA, groups = facB, data = toydf,
panel.groups = function(x, y, subscripts, ...) {
panel.xyplot(x, y, ...)
lindx <- which(y[subscrip...
2006 Feb 18
1
reshaping result of by()
...ecord. My
problem is including the latter:
---<---------------cut here---------------start-------------->---
toydf <- expand.grid(sample(0:50, 50, TRUE), c("A", "B"),
c("pop1", "pop2", "pop3", "pop4", "pop5"))
"getFreq" <- function(x, bks)
{
fhist <- hist(x, breaks = bks, plot = FALSE,
include.lowest = TRUE)
matrix(c(fhist$breaks[-1], fhist$counts),
nrow = length(fhist$breaks[-1]), ncol = 2)
}
freqs <- by(toydf[[1]], list(toydf[[2]], toydf[[3]])...
2009 Jul 13
3
read.delim skips first column (why?)
Hi people,
I have a text file like this one posted:
snp_id gene chromosome distance_from_gene_center
position pop1 pop2 pop3 pop4 pop5 pop6 pop7
rs2129081 RAPT2 3 -129993 "upstream" 0.439009
1.169210 NA 0.233020 0.093042 NA
-0.902596
rs1202698 RAPT2 3 -128695 "upstream" NA
1.815000 NA 0.399079 1.814270 1.382950
NA
rs...
2001 Nov 29
1
of c, cat, paste, and lists??
...pet8"
[16] "compet9" "d" "g" "h"
"last.warning"
[21] "listing" "pop1" "pop10" "pop2" "pop3"
[26] "pop4" "pop5" "pop6" "pop7" "pop8"
[31] "pop9" "s" "vote1" "vote10" "vote2"
[36] "vote3" "vote4" "vote5" "vote6&quo...
2009 Jun 29
5
Help
Hi group,
I found a module for adaptive kernel density estimation for Stata users, but unfortunetly I don't have access to Stata, can I find a similar approach using R?
Thank u so much 4 ur time.
[[alternative HTML version deleted]]
2003 Dec 01
0
No subject
...nd all help would be
appreciated.
TIA.
J
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