Displaying 1 result from an estimated 1 matches for "pmslog2".
2012 Oct 07
1
BioConductor package: 'oligo'
...TGCAGAAGACCATTACCCTACA
> [4] 25 TCACATAGCTGTGCAAGGACCGTAT
> [5] 25 TCGCCTAGCAAAGCTGCCAGCATGT
> [6] 25 TTACGTCTACGTGGTGGTGCTAAGA
> [7] 25 CCGAACGACCTGTTGGACCAAAGCA
> [8] 25 AAGCTAGTCTAGCTCCACCGACGGC
> [9] 25 TTTTCACCGGTGACGTGCCGGTCGC
> [10] 25 GGTTAAGCCCGGCACTATCCGGGCA
> > pmsLog2<-log2(pm(affyCit))
> > plot(pmsLog2) #the plots looks good across arrays (object=affyCit)
>
> However, still get:
> > coefs<-getAffinitySplineCoefficients(pmsLog2, pmSeq)
> Error in model.frame.default(formula = intensities ~ design,
> drop.unused.levels = TRUE) :
>...