search for: pluzhnikov

On Thu, Jan 14, 2016 at 3:43 AM, Paul Pluzhnikov <ppluzhnikov at google.com> wrote: > On Wed, Jan 13, 2016 at 4:17 PM, Kostya Serebryany <kcc at google.com> wrote: >> Inviting Paul to the party (he wrote the libstdc++ sort checker). >> >> On Tue, Jan 12, 2016 at 11:09 PM, Yury Gribov <y.gribov at samsung.com&gt...

...entually N will be ~ 500 K), and use apply inside the loop: > for (iter in 1:1000) { apply(data,3,fisherPval) } fisherPval <- function(x) { fisher.test(x)$p.value } Right now, it takes about 30 sec per iteration on an Intel Xeon 3.06GHz processor. Thanks in advance. -- Anna Pluzhnikov, PhD Section of Genetic Medicine Department of Medicine The University of Chicago ------------------------------------------------- This email is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If...

...<- test$"1"$p.value pvalCases[j] <- test$"2"$p.value } } ############################################## The problem is that it takes ~1 min/iteration (on AMD Opteron 252 processor running Linux). Is there a faster/more efficient way to do this? Thanks, -- Anna Pluzhnikov, PhD Section of Genetic Medicine Department of Medicine The University of Chicago ------------------------------------------------- This email is intended only for the use of the individual or...{{dropped}}

Inviting Paul to the party (he wrote the libstdc++ sort checker <https://gcc.gnu.org/svn/gcc/branches/google/gcc-4_9/libstdc++-v3/include/bits/stl_algo.h> ). On Tue, Jan 12, 2016 at 11:09 PM, Yury Gribov <y.gribov at samsung.com> wrote: > On 01/13/2016 10:08 AM, Yury Gribov wrote: > >> On 01/13/2016 09:57 AM, Kostya Serebryany wrote: >> >>> On Tue, Jan 12,

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Thomas <pthomas8589@gmail.com> Paul Turner <pjt@google.com> Paul Walmsley <paul@pwsan.com> Paul Walmsley &lt...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com> Paul Turner <pjt@google.com> Paul Walmsley...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com> Paul Turner <pjt@google.com> Paul Walmsley...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...

...r@users.sourceforge.net> Paul Moore <paul@paul-moore.com> Paul Moore <pmoore@redhat.com> Paul Mundt <lethal@linux-sh.org> Paul Neumann <paul104x@yahoo.de> Paul Parsons <lost.distance@yahoo.com> Paul Parsons <lost.distance@yahoo.com> (pxa270) Paul Pluzhnikov <ppluzhnikov@google.com> Paul Sbarra <sbarra.paul@gmail.com> Paul Sokolovsky <paul.sokolovsky@linaro.org> Paul Stewart <pstew@chromium.org> Paul Szabo <psz@maths.usyd.edu.au> Paul Taysom <taysom@chromium.org> Paul Thomas <pthomas8589@gmail.com>...