search for: plotprinttiploess

...ich generated the error as follows -- > system.time(fit <- loessFit( log(abs(t(res))), log(abs(t(synthesised))))) Error in loessFit(log(abs(t(res))), log(abs(t(synthesised)))) : ? binary operation on non-conformable arrays Timing stopped at: 0.57 0.06 0.64 NA NA > system.time(fit <- plotPrintTipLoess( log(abs(t(res))), log(abs(t(synthesised))))) Error in 1:layout$ngrid.c : NA/NaN argument In addition: Warning messages: 1: In object$printer : ? $ operator is invalid for atomic vectors, returning NULL 2: In object$M : $ operator is invalid for atomic vectors, returning NULL 3: In object$A : $ ope...

...es( 2 channel cDNA) and am having some problem. My code is : setwd('C:/work/data/limma/ndd1'); files <- c('ndd1_1.txt','ndd1_2.txt','ndd1_3.txt'); RG=read.maimages(files,"arrayvision",sep="\t"); #Normalisation MA=normalizeWithinArrays(RG); #plotPrintTipLoess(MA); #Fit Linear model and Empirical Bayes method fit=lmFit(MA); fit <- eBayes(fit) ; res=topTable(fit,sort.by="P",number=7200); hist(res$P.Value,breaks=50); The error message I get is : Read ndd1_1.txt Read ndd1_2.txt Read ndd1_3.txt Error in switch(method, loess = { : Layout argumen...