Displaying 9 results from an estimated 9 matches for "ploidi".
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2010 May 20
1
Geneland error on unix: Error in MCMC(........ :, unused argument(s) (ploidy = 2, genotypes = geno)
I am receiving the above error ( full r session output below) the
script runs OK in windows. and "genotypes" and "ploidy" are both
correct arguments
any suggestions would be most welcome
Nevil Amos
MERG/ACB
Monash University School of Biological Sciences
> library(Geneland)
Loading required package: RandomFields
Loading required package: fields
Loading required
2006 Mar 29
0
R for Windows crash on new laptop
I'm trying to use a contributed package (rmetasim) to generate simulated
genetic datasets. My scripts work fine when I run them on a Sun
workstation running Solaris 7 and when I run them on a ~4 year old
laptop PC that I have. However, when I run them on my new laptop (Dell
Latitude D410 purchased in August 2005), the simulation will run for a
short (variable) period of time, then R
2006 Mar 29
0
R for Windows crash on new laptop - corrected script
I realized that the script I included in my original post (see below)
was written for an older version of rmetasim and will not work with the
current version. The only change that need be made to get my script to
run with the latest release of rmetasim is to change the command
'simulate.landscape()' to 'sim.landscape()'. My apologies to anyone who
tried to use my script and
2012 Jul 20
0
Forced inclusion of varaibles in validate command as well as step
Dear prof. Harrell,
I'm not able to use the force option with fastbw, here an example of the error I've got (dataset stagec rpart package):
> fitstc <- cph(Surv(stagec$pgtime,stagec$pgstat) ~ age + eet + g2 + grade + gleason + ploidy, data=stagec)
> fbwstc <- fastbw(fitstc,rule="aic",type="individual")
> fbwstc
Deleted Chi-Sq d.f. P Residual d.f.
2007 Feb 26
2
survival analysis using rpart
Hello,
I use rpart to predict survival time and have a problem in interpreting the
output of ?estimated rate?. Here is an example of what I do:
> stagec <-
> read.table("http://www.stanford.edu/class/stats202/DATA/stagec.data",
> col.names=c("pgtime", "pgstat", "age","eet", "g2", "grade", "gleason",
>
2011 Apr 06
1
Error in match.names(clabs, names(xi))
Hi Guys,
I have this part of a program:
library(survival)
Gastric <- cbind.data.frame(Gp=c(rep(1,45),rep(0,45)), ### 2nd gp 0
time=c(1,63,105,129,182,216,250,262,301,301,342,354,356,358,
380,383, 383,388,394,408,460,489,499,523,524,535,562,569,675,676,
748,778,786,797,955,968,1000,1245,1271,1420,1551,1694,2363,2754,2950,
2009 Jan 13
3
problem whit Geneland
I do the these passages:
library(Geneland)
set.seed(1)
data <- simdata(nindiv=200,
coord.lim=c(0,1,0,1) ,
number.nuclei=5 ,
allele.numbers=rep(10,20),
IBD=FALSE,
npop=2,
give.tess.grid=FALSE)
geno <- data$genotypes
coord <- t(data$coord.indiv)
path.mcmc <-
2018 Mar 15
3
stats 'dist' euclidean distance calculation
Hello,
I am working with a matrix of multilocus genotypes for ~180 individual snail samples, with substantial missing data. I am trying to calculate the pairwise genetic distance between individuals using the stats package 'dist' function, using euclidean distance. I took a subset of this dataset (3 samples x 3 loci) to test how euclidean distance is calculated:
3x3 subset used
2010 Jul 18
6
CRAN (and crantastic) updates this week
CRAN (and crantastic) updates this week
New packages
------------
* allan (1.0)
Alan Lee
http://crantastic.org/packages/allan
Automates Large Linear Analysis Model Fitting
* andrews (1.0)
Jaroslav Myslivec
http://crantastic.org/packages/andrews
Andrews curves for visualization of multidimensional data
* anesrake (0.3)
Josh Pasek
http://crantastic.org/packages/anesrake
This