search for: pkgs

CRAN reached 12,000 packages [1] today (December 15, 2017). A huge thank you to the CRAN team! Milestones: 2017-12-15 12000 pkgs (+6.1/day over 165 days) 6910 mnts (+3.2/day) 2017-07-04 11000 pkgs (+6.3/day over 159 days) 6377 mnts (+3.3/day) 2017-01-27 10000 pkgs (+6.3/day over 158 days) 5845 mnts (+3.5/day) 2016-08-22 9000 pkgs (+5.7/day over 175 days) 5289 mnts (+5.8/day) 2016-02-29 8000 pkgs (+5.0/day over 201 days) 4279...

...there helping others, and to various online services that simplify package development. We can all give back by carefully reporting bugs to the maintainers, properly citing packages we use in publications (see citation("pkg")), and help newcomers to use R. Milestones: 2017-01-27 10000 pkgs (+6.3/day over 158 days) 5845 mnts (+3.5/day) 2016-08-22 9000 pkgs (+5.7/day over 175 days) 5289 mnts (+5.8/day) 2016-02-29 8000 pkgs (+5.0/day over 201 days) 4279 mnts (+0.7/day) 2015-08-12 7000 pkgs (+3.4/day over 287 days) 4130 mnts (+2.4/day) 2014-10-29 6000 pkgs (+3.0/day over 335 days) 3444 m...

...him Zeileis, 16 Dec 2009, R-help # Added: support header and preamble Rpackages.bib <- function(filename = paste("Rpackages-",getRversion(), ".bib", sep=""), header=TRUE, preamble=NULL, suppress.warnings=TRUE, verbose = TRUE) { ## installed packages pkgs <- unique(installed.packages()[,1]) if (suppress.warnings) warn <- options(warn=-1) bibs <- lapply(pkgs, function(x) try(toBibtex(citation(x)))) if (suppress.warnings) options(warn) n.installed <- length(bibs) ## omit failed citation calls ok <- !(sapply(bibs, cla...

See below. gs. Error in browse.pkgs("CRAN", "binary") : couldn't find function "avaliable.packages" Your version of R is up to date > browse.pkgs function (repos = getOption("repos"), contriburl = contrib.url(repos, type), type = getOption("pkgType")) { if (.Platfo...

Hi, as pointed out by Neal Gompa, Mageia recently introduced dnf in the distribution (currently only in Cauldron, which is the future Mageia 6), and most probably it will replace urpmi in the future. As such, on Mageia make supermin prefer dnf over urpmi when found, using the same code already used for Fedora. Related change: make test-harder.sh work explicitly also on Mageia

Bind and use rpmvercmp to compare versions of packages when sorting them, instead of an own string-based comparison function. --- src/librpm-c.c | 12 ++++++++++++ src/librpm.ml | 1 + src/librpm.mli | 1 + src/rpm.ml | 2 +- 4 files changed, 15 insertions(+), 1 deletion(-) diff --git a/src/librpm-c.c b/src/librpm-c.c index 1ae3bad..fc847d6 100644 --- a/src/librpm-c.c +++

...s. I never had this kind of errors before. >> >> sudo R >> >> source("http://bioconductor.org/biocLite.R") >>> >> >> biocLite() >>> >> >> warnings() >>> >> Warning messages: >> 1: In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, ... : >> installation of package 'Matrix' had non-zero exit status >> 2: In install.packages(pkgs = pkgs, repos = repos, dependencies = >> dependencies, ... : >> installation of package 'preprocessCor...

Recently Brian Ripley had occasion to mock my inability to see a comment in the code for arima(), in the stats package. After considerable dredging around in the r-news archives I found reference to keep.source() and keep.source.pkgs(), which I conjectured just ***might*** possibly be the ``obvious'' resource to which Prof. Ripley thought I ought to have resorted. However, after substantial experimentation, I am still at a loss to get at the original source code for arima() (replete with comments) save by accessing the...

...2:01.275986160 +0200 @@ -25,9 +25,9 @@ } if(is.null(available)) available <- CRAN.packages(contriburl = contriburl, method = method) + have <- .packages(all.available = TRUE) if(dependencies) { # check for dependencies, recursively p0 <- p1 <- unique(pkgs) # this is ok, as 1 lib only - have <- .packages(all.available = TRUE) repeat { if(any(miss <- ! p1 %in% row.names(available))) { cat("dependencies ", paste(sQuote(p1[miss]), sep=", "), @@ -54,6 +54,8 @@ } } +...

...: unable to open connection In addition: Warning message: cannot open compressed file 'hs95av2hs3ug6cdf_6.0.0.tar.gz/DESCRIPTION' >traceback() 5: gzfile(file, "r") 4: read.dcf(file.path(curPkg, "DESCRIPTION"), c("Package", "Version")) 3: unpackPkg(pkgs[i], pkgnames[i], lib, installWithVers) 2: .install.macbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, installWithVers = installWithVers, dependencies = dependencies) 1: install.packages("hs95av2hs3ug6cdf_6.0.0.tar...

...conductor.org/biocLite.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). > biocLite("ALL") Using R version 2.11.1, biocinstall version 2.6.7. Installing Bioconductor version 2.6 packages: [1] "ALL" Please wait... Warning in install.packages(pkgs = pkgs, repos = repos, ...) : argument 'lib' is missing: using '\Users\dbickel/R/win-library/2.11' Error in if (ok) { : missing value where TRUE/FALSE needed > source("http://bioconductor.org/biocLite.R") BioC_mirror = http://www.bioconductor.org Change using chooseBio...

Just code motion, no functional change. --- src/rpm.ml | 25 ++++++++++--------------- 1 file changed, 10 insertions(+), 15 deletions(-) diff --git a/src/rpm.ml b/src/rpm.ml index ce803e1..771022e 100644 --- a/src/rpm.ml +++ b/src/rpm.ml @@ -288,11 +288,7 @@ let rec fedora_download_all_packages pkgs dir = * Use name.arch so it can download any version but only the specific * architecture. *) - let rpms = List.map rpm_of_pkg (PackageSet.elements pkgs) in - let rpms = List.map ( - fun { name = name; arch = arch } -> - sprintf "%s.%s" name arch -...

...ies=TRUE) # problems: The downloaded packages are in ?/tmp/Rtmpb0gy50/downloaded_packages? There were 32 warnings (use warnings() to see them) > warnings() Warning messages: ================================================================================================ 1: In install.packages(pkgs, repos = views[[i]]$repository, ... : installation of package 'RODBC' had non-zero exit status message error: configure error: "ODBC headers sql.h and sqlext.h not found" solved: apt-get install unixodbc unixodbc-dev ==========================================================...

Is it just me, or did a corrupt PACKAGES.gz file get installed in the bin/windows/contrib/3.2 directory of CRAN mirrors recently? gzfile() complains about it and Cygwin's gzip cannot decompress it. I tried the following repos <- "https://cran.rstudio.com" v <- "3.2" pkgs.gz <- paste(sep="/", repos, "bin/windows/contrib", v, "PACKAGES.gz") tfile <- tempfile(fileext=".gz") download.file(pkgs.gz, dest=tfile) r.gz <- readLines(gzfile(tfile, "r")) tail(system(paste("c:\\cygwin\\bin\\gzip -d - ", shQuo...

Dear useRs, Is it possible to get the R package usage statistics? That is, does R contain any tools to estimate which packages were used and how often? I am going to temporary change the workplace and packing the data and their processing scripts on my computer in order to continue my projects. During my work on the current workplace I periodically have had installed new R

...biocinstall’ 2: In safeSource() : Redefining ‘biocinstallPkgGroups’ 3: In safeSource() : Redefining ‘biocinstallRepos’ > > biocLite("biomaRt") Running biocinstall version 2.4.11 with R version 2.9.0 Your version of R requires version 2.4 of Bioconductor. Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : argument 'lib' is missing: using '/home/mauede/R/x86_64-unknown-linux-gnu-library/2.9' also installing the dependencies ‘XML’, ‘RCurl’ trying URL 'http://bioconductor.org/packages/2.4/extra/src/contrib/XML_2.5-1.tar.gz...

Hello all-- I am trying to determine what I have isntalled from a given repository. I have seen several references to "yum repo-pkgs" which I think is what would work for me, but "repo-pkgs" does not seem to be a part of yum 3.2.29. Is this a yum add on that I could get somewhere? -- -------------------------------------------- MzK "Way down deep, we're all motivated by the same urges. Cats have th...

...nstall version 2.7.4. Installing Bioconductor version 2.7 packages: [1] "Biobase" Please wait... Error: subscript out of bounds > traceback() 7: .readPkgDesc(lib, fields) 6: installed.packages(lib.loc = libpath, fields = c("Package", "Version")) 5: getDependencies(pkgs, dependencies, available, lib) 4: .install.winbinary(pkgs = pkgs, lib = lib, contriburl = contriburl, method = method, available = available, destdir = destdir, dependencies = dependencies, libs_only = libs_only, ...) 3: install.packages(pkgs = pkgs, repos = repos, ...) at biocinsta...

Hi, Encounter a compilation issue related to c++. Software versions: - gcc 4.7.4 - llvm git commit 98a1ca117e6743dd7f2d505443a96f591d083eab Build log: Scanning dependencies of target LLVMLTO [ 53%] Building CXX object lib/LTO/CMakeFiles/LLVMLTO.dir/Caching.cpp.o /tmp/pkgs/llvm/lib/LTO/Caching.cpp: In lambda function: /tmp/pkgs/llvm/lib/LTO/Caching.cpp:74:7: error: looser throw specifier for 'virtual llvm::lto::localCache(std::string, llvm::lto::AddFileFn)::<lambda(unsigned int, llvm::StringRef)>::CacheStream::~CacheStream()' In file included from /tmp/...

...t;us-ascii" Content-disposition: inline Content-transfer-encoding: 7bit Dear all, I came across puzzling behaviour of R CMD INSTALL, which I tracked down to the fact that in some shells (or in some user customizations of them), the cd command prints out the new directory. As a result, the $pkgs variable gets a wrong value, e.g.in the following transcript: philip at gen031:tmp$ R CMD INSTALL GlobalAncova /usr/lib/R/bin/INSTALL: line 873: cd: /home/philip/tmp/GlobalAncova /var/tmp/philip/misc/GlobalAncova: No such file or directory sed: can't read DESCRIPTION: No such file...