search for: pkgdeptool

I would like to turn off all the messages during library(aPackage) or require(aPackage) I tried different commands: invisible, capture.output, sink but none of them is working. For example, loading VGAM, gives a lot of unnecessary messages: > library(VGAM) Attaching package: 'VGAM' The following object(s) are masked from package:splines : bs The

Hi, Recently I try to install Biobase component using the tutorials from cran.r-project.org/doc/Rnews/Rnews_2006-5.pdf I tried u <- "http://bioconductor.org/biocLite.R" > source(u) > biocLite("pkgDepTools", dependencies=TRUE) Running biocinstall version 2.0.8 with R version 2.5.1 Your version of R requires version 2.0 of Bioconductor. Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies, : argument 'lib' is missing: using '/usr/local/lib/R/s...

...Roger for pointing this out. I cannot believe that i never discovered this by myself ...... If anybody takes up the challenge Roger set up i would love to see it ;-)) >If you have a little time and want >to really draw in the masses, try doing clickable image maps from the >Bioconductor pkgDepTools: >http://bioconductor.org/packages/2.1/bioc/html/pkgDepTools.html >because some of the unobtrusive short-name packages are key nodes in package >dependency graphs. The dependency trees are very illuminating. Automating the >updates would be positive. If you could also run against the...

Hi, I am hoping someone can help me with a sampling question. I am using the following function to sample 10 unique observations: x <- sample(1:100, 10, replace=F) Given the first 10 observations, I need to sample another 5 unique observations from the remainder. I essentially want to do a Monte Carlo type analysis on the results. I would appreciate any feedback. Thanks -- View this

I have roughly 80 or so packages sources. These were obtained by taking a snapshot of certain CRAN packages a few months ago using install.packages( pkgs = pckNames, destdir = "/home/max", repos = "http://cran.r-project.org" dependencies = c("Depends", "Imports", "Suggests")) We need to install these versions of the

Is there a painless way to find the names of all packages on CRAN that "Depend" on a specified package? url: www.econ.uiuc.edu/~roger Roger Koenker email rkoenker at uiuc.edu Department of Economics vox: 217-333-4558 University of Illinois fax: 217-244-6678 Champaign, IL 61820

Is there a way, maybe using Duncan TL's RCurl, to efficiently test whether an URL such as http://$CRAN/src/contrib/ has changed? I.e. one way is via a test of a page in that directory as per (sorry about the long line, and this would be on Linux with links and awk installed) > strptime(system("links -width 160 -dump http://cran.r-project.org/src/contrib/ | awk

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is