search for: pkg3

Dear R devels, let's say I have three packages "pkg1", "pkg2" and "pkg3" which all contain new S4 classes and methods. Where "pkg3" depends on "pkg2" and "pkg2" depends on "pkg1". Moreover, all three packages have namespaces. 1) I use ".onLoad <- function(lib, pkg) require(methods)". Do I also have to import...

...foo.Rd and have dependencies that indicate only codoc and examples need to be re-run, not tests and vignettes. (R CMD check can to do this, the problem is moving the appropriate new pieces, in the appropriate way, into the pkg1.Rcheck directory.) The difficulty is exacerbated for me because I have pkg3 depends on pkg2 depends on pkg1. If I make a change to src/pkg1/inst/doc/guide.tex then I really should only need to re-do the vignettes for pkg1, but instead I have to re-do the whole "R CMD check" for pkg1, pkg2, and pkg3. Suggestions would be appreciated. Thanks, Paul Gilbert -.-.-.-...

...kage being attached and a namespace being attached. -Does "successfully load" mean something different from actually using the package? That is, can we assume that if the package loads then all the functions to run things will actually be found? -If pkg1 uses a function foo in pkg3 indirectly, by a call to a function in pkg2 which then uses foo, how should pkg1 indicate the relationship with foo's pkg3, or is there no need to indicate any relationship with pkg3 because that is all looked after by pkg2? Thanks, Paul

Hi, 'R CMD INSTALL -l' will stop if some error is encountered. I don't find in the manual an option to keep the command running. Is there such an option? -- Tom

Hello! I have a wish/proposal. Is it possible to include some option in install.packages() for Delete downloaded files (y/N)? at the end of that process. It can be quite anoying if you must install several packages and wait meanwhile to type y/n for each package separately. -- Lep pozdrav / With regards, Gregor GORJANC ---------------------------------------------------------------

...commas. What I came up with is this: let cmd = [| "dpkg-query"; "-S"; path |] in debug "%s" (String.concat " " (Array.to_list cmd)); (try let pkg = g#command cmd in (* What we get is a string of form "pkg1, pkg2:arch, pkg3: /path" *) let len = String.length pkg in let rec loop i = if i >= len then (* This is fishy. Internal bug? *) error (f_"internal error: file_owner: failed to process string '%s'") pkg else if pkg.[i...

Greetings. I am a System Administrator, and thus have very little knowledge of R itself. I have been asked to install a list of some 200 packages (from CRAM) to R. Rather than installing each package manually, I was hoping I could script this. I've written a BASH script that hopefully will do this, but I'm wondering about the Mirror Selection portion of the installation process.

Hi, It feels like I should be able to do something like: R CMD INSTALL lib='/usr/lib64/R/library' repos='http://proxy.url/cran' package We have a bunch of servers (compute nodes in a Rocks cluster) in an isolated subnet, there is a basic pass-through proxy set up on the firewall (the head node) which just passes HTTP requests through to our nearest CRAN mirror. when using

Hi, is it intended that one cannot install packages in non-interactive mode, without explicitly setting a CRAN mirror (see below)? Couldn't a default mirror be used in that case? Thank you. Bests, Renaud $ Rscript --vanilla -e "install.packages('whatever')" Installing package into '/home/renaud/R/x86_64-pc-linux-gnu-library/3.0' (as 'lib' is unspecified)

...: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ?AnnotationForge? had non-zero exit status As you can see the warning message is truncated so I can't see what happened to these packages. What about having a message like package(s) not available: pkg1, pkg2, pkg3, etc... so when it's truncated we don't loose the important part of the story? I guess the same kind of change could be made to the other warning messages, and, more generally, to any warning/error message obtained by injecting an arbitrary (and potentially long) list of strings. Thanks,...

On Tue, 21 Jul 2020 at 11:05, Jos? Ab?lio Matos <jamatos at fc.up.pt> wrote: > > On Friday, 3 July 2020 18.36.17 WEST I?aki Ucar wrote: > > Nice! What if we create a group "R" on Pagure and a repo > > "fedora-scripts" or something like that? > > I would like to improve the scripts but FWIW here it comes a rough version of > the script I used.

...this: > > let cmd = [| "dpkg-query"; "-S"; path |] in > debug "%s" (String.concat " " (Array.to_list cmd)); > (try > let pkg = g#command cmd in > (* What we get is a string of form "pkg1, pkg2:arch, pkg3: /path" *) > let len = String.length pkg in > let rec loop i = > if i >= len then > (* This is fishy. Internal bug? *) > error (f_"internal error: file_owner: failed to process string '%s'") pkg &g...

I installed some downloaded packages in R. I always do $sudo R CMD INSTALL <anRpackage.tar.gz> By default it is storing these packages into my directory /home/mary/R/x86_64-pc-linux-gnu-library/2.13/. However I want them to be systemwide into /usr/local/lib/R/site-library/ folder. I tried $sudo R R> install.packages("anRpackage", dep=TRUE) I did not succeed into getting

I installed some downloaded packages in R. I always do $sudo R CMD INSTALL <anRpackage.tar.gz> By default it is storing these packages into my directory /home/mary/R/x86_64-pc-linux-gnu-library/2.13/. However I want them to be systemwide into /usr/local/lib/R/site-library/ folder. I tried $sudo R R> install.packages("anRpackage", dep=TRUE) I did not succeed into getting

...let cmd = [| "dpkg-query"; "-S"; path |] in > > debug "%s" (String.concat " " (Array.to_list cmd)); > > (try > > let pkg = g#command cmd in > > (* What we get is a string of form "pkg1, pkg2:arch, pkg3: /path" *) > > let len = String.length pkg in > > let rec loop i = > > if i >= len then > > (* This is fishy. Internal bug? *) > > error (f_"internal error: file_owner: failed to process string &...

Hi, this series implements the first bits in v2v to convert Debian/Ubuntu (and derived) guests. The series does not complete the support (see known issues below), but all the patches here should be fit for review and inclusion. The series does not enable the conversion, yet. Known issues: * there is no grubby nor Bootloader::Tools Perl module available in Debian, so there is no way to know