search for: phylgr

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2007 Jan 26
1
Package for phylogenetic tree analyses
Hi I am looking for a package that 1. reads in a phylogenetic tree in NEXUS format 2. given two members/nodes on the tree, can return the distance between the two using the tree. I came across the following packages on CRAN ouch, ape, apTreeShape, phylgr all of which seem to provide extensive range of functions for reading in a Nexus-format tree and performing phylogenetic analyses, tree comparisons etc, but none to the best of my undestanding seem to provide a function obtain distances (in terms of branch lengths) between two nodes on a single tre...