search for: phospho

Hi, I'm using GAGE/pathview to analyze my RNA-seq and phospho-protein data. The following error occurs after this command line below: >pv.out.list <- sapply(path.ids2[1:3], function(pid) pathview( gene.data = cnts.d, pathway.id = pid, gene.idtype="SYMBOL",kegg.native = F, same.layer = T, species = "hsa", kegg.dir = "test&qu...

...ysis,_Gluconeogenesis,_and_Pyruvate", "Guanidino_and_Acetamido", "Hemoglobin_and_Porphyrin", "Histidine", "Inositol", "Ketone_Bodies", "Leucine,_Isoleucine_and_Valine", "Long_Chain_Fatty_Acid", "Lysine", "Lyso-phospho-ether", "Lysolipid", "Lysoplasmalogen", "Medium_Chain_Fatty_Acid", "Methionine,_Cysteine,_SAM_and_Taurine", "Mevalonate", "Monoacylglycerol", "Nicotinate_and_Nicotinamide", "Oxidative_Phosphorylation", "Pantot...

...enesis,_and_Pyruvate", > "Guanidino_and_Acetamido", "Hemoglobin_and_Porphyrin", "Histidine", > "Inositol", "Ketone_Bodies", "Leucine,_Isoleucine_and_Valine", > "Long_Chain_Fatty_Acid", "Lysine", "Lyso-phospho-ether", "Lysolipid", > "Lysoplasmalogen", "Medium_Chain_Fatty_Acid", > "Methionine,_Cysteine,_SAM_and_Taurine", > "Mevalonate", "Monoacylglycerol", "Nicotinate_and_Nicotinamide", > "Oxidative_Phosphorylation...

On 19/09/2017 9:47 AM, greg holly wrote: > Hi all; > > I have data at 734*22 dimensions with rows and columns names are > non-numeric.When I convert this data into matrix then all values show up > with quotes. Then when I use > x1= noquotes(x) to remove the quotes from the matrix then non-numeric row > names remain all other values in matrix disappear. > > Your help is

Hi all; I have data at 734*22 dimensions with rows and columns names are non-numeric.When I convert this data into matrix then all values show up with quotes. Then when I use x1= noquotes(x) to remove the quotes from the matrix then non-numeric row names remain all other values in matrix disappear. Your help is greatly appreciated. Greg [[alternative HTML version deleted]]