Displaying 7 results from an estimated 7 matches for "phen".
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chen
2006 Apr 26
2
help in R
...> gntp <- as.data.frame(lapply(temp,convt))
>
> ###create new snp data with ids and gntp only
> names(gntp) <- snp.name
> ids <- as.data.frame(snp.dat[,1:n.id])
> names(ids) <- c("fid")
>
> snp.dat <- cbind(ids,gntp)
>
>
>
> #read in phenotype data
> #------------------------------------------------------
> phen.dat <- read.table("c:/tina/phd/bs871/fram.csv",header=T,sep=",",na.string='')
> phen.name <- scan("c:/tina/phd/bs871/fram.csv",nline=1,what="character")
Read 1 i...
2010 May 17
0
Unable to execute lm function within a Rscript launch in the Linux Terminal
...f this
mail explains. The following is the code of the Rscript :
myRscript.r
--------------------------------
1 #!/usr/bin/Rscript
2
3 #Read data
4
data=read.table("/home/morisseau/stage/recherche/gwas/data/CFHLC5/CFHLC_format_files_rm_07052010/output/windowstemp.txt")
5
6 data=t(data)
7
phen=read.table("/home/morisseau/stage/recherche/gwas/data/CFHLC/CFHLC_format_files_rm_07052010/input/Admixmap_simphen_simu1_causalsnp61.txt")
8 phen=phen[-1]
9 phen=t(phen)
10 val=c(1,2)
11 for (i in 1:dim(data)[2]){
12 val[1]=data[,i][3]
13 test=chisq.test(phen,data[,i][-(1:4)])
14 val[2]=te...
2007 Aug 02
1
New user help with plot.default
...value pertains i.e.
# SQG Chemical
#1 0.07918 Cd
#2 -0.15490 Cd
#3 -0.15490 Cd
#4 0.95904 Cd
#5....etc. etc.
#assign correct plotting order for each chemical level
OrderedLevels<-factor(Chemical,levels=c("Cd", "Cu", "Zn", "Phen", "Ant",
"Flu", "Pyr", "Tot"))
#set axis label and tick mark label font sizes to be readable when pasted
into final document
par(cex.lab=1.2,cex.axis=1.3)
#produce plot with plotting symbols of round black dots with cex multiplier
of 1.5
plot.default(SQG...
2011 Feb 04
1
GWAF package: lme.batch.imputed(): object 'kmat' not found
Hello, All,
GWAF 1.2
R.Version() is below.
system(lme.batch.imputed(
phenfile = 'phenfile.csv',
genfile = 'CARe_imputed_release.0.fhsR.gz',
pedfile='pedfile.csv',
phen='phen1',
covar=c('covar1','covar2'),
kinmat='imputed_fhs.kinship.RData',
outfile='imputed.FHS.IBC.GWAF.LME.output.0.txt'
))
Gives the error...
2000 Mar 07
1
Fail to compile on FreeBSD 3.3
...local/src/openssh-1.2.2/sshd.c(.text+0x1e64): undefined reference to `skey_passcheck'
sshd.o: In function `do_fake_authloop':
/usr/local/src/openssh-1.2.2/sshd.c(.text+0x1fff): undefined reference to `skey_fake_keyinfo'
*** Error code 1
Stop.
How can I solve it, please help?
Regards,
Phen.
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1999 Oct 27
0
Null PrinterName
...ile was generated by /usr/sbin/magicfilterconfig.
#
lp|hplj5si|RCF HPLJ5Si:\
:lp=/dev/null:sd=/var/spool/lpd/hplj5si:rm=rcfhp0.rhic.bnl.gov:rp=hplj5si:\
:sh:pw#80:pl#66:px#1440:mx#0:\
:if=/etc/magicfilter/psonly600-filter:\
:af=/var/log/lp-acct:lf=/var/log/lp-errs:
rhicqms|PHEN QMS-1725:\
:lp=/dev/null:sd=/var/spool/lpd/rhicqms:rm=rcf.rhic.bnl.gov:rp=rhicqms:\
:sh:pw#80:pl#66:px#1440:mx#0:\
:if=/etc/magicfilter/psonly600-filter:\
:af=/var/log/lp-acct:lf=/var/log/lp-errs:
===================================================
The only definition in...
2009 Apr 21
3
Deleting rows or cols that do not meet cut off
How can I delete both rows and columns that do not meet a particular cut off value.
Example:
> d <- rbind(c(0, 1, 6, 4),
+ c(2, 5, 7, 5),
+ c(3, 6, 1, 6),
+ c(4, 4, 4, 4))
> f <- as.matrix(d)
> f
[,1] [,2] [,3] [,4]
[1,] 0 1 6 4
[2,] 2 5 7 5
[3,] 3 6 1 6
[4,] 4 4 4 4
I would like to delete all