search for: pgirmess

Working under Windows XP, I am compiling a package called 'pgirmess' with the command rcmd build --binary --auto-zip pgirmess I have this message error after having listed: functions text html latex example chm .... zipping help file hcc: not found cp: cannot stat 'c:/TEMP/Rbuild365620874/pgirmess/chm/pgirmess.chm': No such file or directory make[1...

Hi, For the first time I have a strange behaviour when checking a package before 'packaging' the code. Looks like a file cannot be read. rcmd check pgirmess * using log directory 'U:/Documents and Settings/pgiraudo/Mes documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck' * using R version 2.13.2 (2011-09-30) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'pgirmess/DESCRIPTION'...

Dear R-help, I have been trying to use the TukeyHSDs function in the "pgirmess" package to quickly extract all significant pairwise comparisons in an aov object. However, it seems that this function isn't working as intended when only the two last populations means being tested are significant. An example of this can be seen below: >numbers<-c(464,482,453,4...

hi there, after bumping into a problem for installing pgirmess package in linux mint 14, i figured out this solution that seemed to work fine ----------------------- * in synaptic or similar software : installation of proj dev lib & dependances # to sort out problems of rgdal installation of libgdal1 dev lib & dependances # to sort out problems of rg...

Hi there, I am doing multiple comparisons for data that is not normally distributed. For this purpose I tried both functions kruskal{agricolae} and kruskalmc{pgirmess}. It confuses me that these functions do not yield the same results although they are doing the same thing, don't they? Can anyone tell my why this happens and which function I can trust? kruskalmc() tells me that there are no differences between any of the groups (i.e. the "difference&qu...

I am developping a package (pgirmess) that since long does not go through CRAN MacOSX checks, just because I have this command in one of the examples. text(mydata[,3],mydata[,4],paste(round(dirs,0),"?"),cex=0.7) It makes: <ERROR: re-encoding failure from encoding 'latin1'> text(mydata[,3],mydata[,4],paste(...

Dear listers, I was used to package pgirmess under Windows with everything OK, but, for the first time, I had a trial this afternoon on Ubuntu 7.10 gutsy (I have a double boot computer and work more and more under unix) and R 2.7.0. Everything went OK except this: sudo R CMD check pgirmess ..... * checking examples ... ERROR Running exam...

...far). Just adding a new function in the R directory today, when running make-package and thus excuting the command ..\..\bin\R CMD build --force --binary --auto-zip %1, I got the following message after the "compile" stage, preparing the package for lazy loading : preparing package pgirmess for lazy loading Error in "names<-.default"(`*tmp*`, value =c("R", "Platform", "Date", : names attribute[4] must be the same length as the vector [1] Execution halted make: ***[lazyload] Error 1 *** Installation of pgirmess failed *** (pgirmess i...

Dear list! I work with multiple Kruskal-Wallis test (kruskalmc, package pgirmess), which evaluates differences in medians among groups (5 groups). A result of a test is significant differences among some groups, while median values are the same for 4 groups (using tapply). Why? p.s.: number of samples in groups vary from 50 to 4900. Thanks to all, OV .

...psbabel program must be present and on the user's PATH for the function to work see <http://www.gpsbabel.org/>. The function has been tested on the following Garmin GPS devices: Etrex Summit, Etrex Vista Cx and GPSmap 60CSx. } ...compiling under R 2.9.2 (rcmd build --binary --auto-zip pgirmess) I get this Details: The function calls gpsbabel via the system. The gpsbabel program must be present and on the user's PATH for the function to work, see <http://www.gpsbabel.org/>. The function has been tested on the following Garmin GPS devices: Etrex Summit, Etr...

Dear Listers, I got this message when compiling a package: * creating pgirmess-manual.tex ... OK * checking pgirmess-manual.text ... ERROR LaTex errors when creating DVI version. This typically indicates Rd problems. The message is quite explicit but I struggled a lot before understanding that the trouble comes from a single file "selMod.rd" among 44 topics. Even...

...null mixed model with a mixed model with one independent variable. > lmmedt1<-lme(mediane~1, random=~1|site, na.action=na.omit, data=bdd2) > lmmedt9<-lme(mediane~log(0.0001+transat), random=~1|site, na.action=na.omit, data=bdd2) Using the Akaike Criterion and selMod of the package pgirmess gives the following output: > selMod(list(lmmedt1,lmmedt9)) model LL K N2K AIC deltAIC w_i AICc deltAICc w_ic 2 log(1e-04 + transat) 44.63758 4 7.5 -81.27516 0.000000 0.65 -79.67516 0.000000 0.57 1 1 43.02205 3 10.0 -80.04410 1.231069...

Dear listers, I am tryin to install a package in a student training room. Unsuccessfull! With this message: > install.packages("pgirmess") trying URL `http://cran.r-project.org/src/contrib/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 77400 bytes opened URL ================================================== downloaded 75Kb trying URL `http://cran.r-project.org/src/contrib/pgirmess_1.2.5.tar.gz' Con...

Hola, tenemos como equivalencia no paramétrica al Anova de 1 vía el test Kruskal Wallis, pero ¿existe un test no paramétrico equivalente al Anova de 2 vías? Gracias. Saludos. -- Sec. Apoyo Estadístico. Servicio de Apoyo a la Investigación (SAI) Vicerrectorado de Investigación e Internacionalización. Universidad de Murcia Edif. SACE. Campus de Espinardo. 30100 Murcia @. mariaelvira.ferre en

Hi all, After running kruskal.test I have got results (p<0,005) pointing to reject the hypothesis that the samples were draw from the same population. Howerver when I run the kruskalmc there are no significant differences in any of the multiple comparisons. Is that possible? Some clarification? Thanks, Humber <https://sites.google.com/site/humberandrade> [[alternative HTML version

Hi there, I've got a small question : is there any post-hoc test for Kruskal rank sum test integrated in R ? I know that the Nemenyi test is one of the post-hoc that can be used, but there's no (to by knowledge) R function for it. What should I do ? Thanks, Etienne

Hi, I would like to find out if the kruskalmc command in the pgirmess package controls for the family-wise type-I error rate. Thank you Dr. Iasonas Lamprianou Assistant Professor (Educational Research and Evaluation) Department of Education Sciences European University-Cyprus P.O. Box 22006 1516 Nicosia Cyprus Tel.: +357-22-713178 Fax: +357-22-590539 Honorary...

Dear all, I did a Kruskall-Wallis test for a comparison of a variable of interest between 10 sites and I get a significant result (p=0.0019). however, when I perform a post-hoc test using kruskalmc from the pgirmess package, I get no difference between any of the paired comparisons. I cannot find anything in the internet, not in my stats books about how to explain this contradictory result. I have also seen that somebody else asked this question in this forum but she got no answers. Can anybody help me unde...

Hi, I use glht to make multcomp, using Tukey, from a glm model. It is possible to get a more simplified output of result? Somethink like ordering by letters. Thanks Ronaldo -- Human kind cannot bear very much reality. -- T. S. Eliot, "Four Quartets: Burnt Norton" -- > Prof. Ronaldo Reis J?nior | .''`. UNIMONTES/Depto. Biologia Geral/Lab. de Ecologia | : :' :

Dear all, I run a kruskal wallis test and found significant results. Then, I conducted all pairwise comparisons and found no significant results. Could anyone please give me a hint as to why this happens or redirect me towards a specific web page where I can find more info? (I used alpha=5% and made no bonferroni or other correction for the pairwise comparisons) Thank you   Dr. Iasonas