Displaying 20 results from an estimated 23 matches for "pgcc".
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2006 Mar 09
1
R2.2.1-patched build failed with PGI 6.1 on x86-64
...-patched using the Portland Group compiler suite
on our dual Opteron 250 box running Scyld 29cz5 (based on RH, kernel
2.4.29), I get:
make[5]: Leaving directory
`/home/andy/Rbuild/R221-pgi/src/library/tools/src'
make[5]: Entering directory
`/home/andy/Rbuild/R221-pgi/src/library/tools/src'
pgcc -I../../../../include -I/include -I/include/CC -fpic -O2 -Kieee -c
/home/andy/Rbuild/R-patched/src/library/tools/src/text.c -o text.o
pgcc -I../../../../include -I/include -I/include/CC -fpic -O2 -Kieee -c
/home/andy/Rbuild/R-patched/src/library/tools/src/init.c -o init.o
pgcc -I../../../.....
2006 May 18
0
R-devel and PGI 6.0 compile error
I am trying to compile R-devel (R-devel_2006-05-17.tar.gz) on Red Hat
Enterprise Linux AS release 3 (Taroon Update 7) using the Portland Group
compiler 6.0. (I have not yet successful compiled R on this
configuration, so I don't know if this is a new problem.) I get an error
pgcc -L/usr/local/pgi/linux86-64/6.0/libso -L/usr/lib64 -o dftables
dftables.o
../dftables chartables.h
../dftables: error while loading shared libraries: libpgc.so: cannot open
shared object file: No such file or directory
make[3]: *** [chartables.h] Error 127
The library containing libpgc.so is in...
2005 Aug 31
1
Build Portland Group Compiler
...hat puzzles me is that there is warning messages indicating C
longs are 4 bytes.
*******************************************
% configure --host=x86_64-unknown-linux-gnu
.
.
.
R is now configured for x86_64-unknown-linux-gnu
Source directory: .
Installation directory: /usr/local/R.pgcc
C compiler: /usr/pgi/linux86-64/6.0/bin/pgcc -g -O2
-mieee-fp
C++ compiler: /usr/pgi/linux86-64/6.0/bin/pgCC -g
Fortran compiler: /usr/pgi/linux86-64/6.0/bin/pgf77 -O2
Interfaces supported: X11
External libraries: readline
Additiona...
2006 May 11
0
PGI 6.1 compile error
...have not used this compiler before, so it is possible
things are messed up more than usual, even for me.
Following the R Installation and Administration notes I set
export PGI=/usr/pgi/linux86-64/6.1
export PATH=$PGI/bin:$PATH
export MANPATH=$MANPATH=$PGI/man:/
export CC=pgcc
export CFLAGS="-g -O2 -Kieee"
export CPPFLAGS="-I$PGI/include -I$PGI/include/CC"
export F77=pgf77
export FFLAGS="-g -O2 -Kieee"
export CXX="pgCC"
export CXXFLAGS="-g -O2 -Kieee"
export F95=pgf95
export...
2004 Oct 04
1
compile R-1.9.1 with Portland fortran
Dear R-users,
Has any one compiled R-1.9.1 successfully with Portland
pgcc pgCC and pgf77? I can not configurate it with
./configure since it told me
checking for Fortran name-mangling scheme... configure:
error: cannot compile a simple Fortran program
Can any one give me some advice. Thank you.
My platform: Linux-2.4.26, pentium4, portland compiler 5.1...
2007 Nov 26
1
Problem with configure's detection of glob on 2.6.0 (PR#10468)
...2.6.0
OS: SuSe Linux 9.3 x86_64
Submission from: (NULL) (194.80.32.10)
A "vanilla" version of R configures and compiles without a problem on my system.
Switching to using the PGI compiler configures correctly (see the values at the
bottom fo thismessage), but compilation aborts with:
pgcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I.
-I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H
-Mvect=sse -Mscalarsse -Mcache_align -O2 -Kieee -c platform.c -o platform.o
PGC-S-0040-Illegal use of symbol, glob_t (platform.c: 1141)
PGC-W-01...
2005 Aug 23
1
compile R with Portland Group compiler
...Can anyone advise me on how to compile R with Portland Group
compiler on a Opeteron machine with Red Hat Enterprise Linux WS release
4 installed?
I've edit config.site file to pick portland group compilers instead of
gcc. Here is the list of modified flags:
CC=/usr/pgi/linux86-64/6.0/bin/pgcc
CFLAGS='-g -O2'
CPPFLAGS='-I/usr/pgi/linux86-64/6.0/include
-I/usr/pgi/linux86-64/6.0/include/CC'
F77=/usr/pgi/linux86-64/6.0/bin/pgf77
FLAGS='-O2'
CPICFLAGS=-fPIC
FPICFLAGS=-fPIC
SHLIB_LDFLAGS=-shared
LDFLAGS='-L/usr/pgi/linux86-64/6.0/lib -L/usr/lib64'
CXX=/usr/pg...
2008 Oct 30
1
Compiling R Packages
...m having a difficult time installing it. I have set the $R_LIBS variable correctly.
The MPI libraries are available through the PGI compiler, but this R instance was compiled with GCC.
The Rmpi package can be compiled and installed with
%R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args="CC=pgcc --with-mpi=/shared/pgi725/linux86-64/7.2/mpi/mpich"
But when entering R and loading the library, I get
%R
> library(Rmpi)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/home/<username>/.Rlib/Rmpi/libs/Rmpi.so':
/home/<username>/.Rl...
1999 Mar 06
1
Difficulties with egcs-1.0.3 on RedHat 5.2?
...R-0.63.3/src/R-0.63.3/tests/Examples'
make[1]: *** [test-Examples] Error 2
make[1]: Leaving directory `/afs/cs.wisc.edu/unsup/R-0.63.3/src/R-0.63.3/tests'
make: [test-All] Error 2 (ignored)
gstat03(26)% gcc -v
Reading specs from /s/egcs-1.0.3a/i386_linux22/lib/gcc-lib/i386-redhat-linux/pgcc-2.90.29/specs
gcc version pgcc-2.90.29 980515 (egcs-1.0.3 release)
gstat03(27)% g77 -v
Reading specs from /s/egcs-1.0.3a/i386_linux22/lib/gcc-lib/i386-redhat-linux/pgcc-2.90.29/specs
gcc version pgcc-2.90.29 980515 (egcs-1.0.3 release)
The last part of base-Ex.Rout is
> ###--- >>>...
2003 Apr 21
1
building R 1.7.0 under RH7.3 (PR#2808)
...being unable to
determine environment variables.
I am trying to use the PG set of compilers (because the netCDF library was
built with them, and I will need to use it. I have had problems with this in
the past, although particularly with the Intel Compilers).
setenv R_PAPERSIZE letter
setenv CC pgcc
setenv F77 pgf90
setenv CXX pgCC
[note ALL other environment vars are "undefined", including LD_LIBRARY_PATH]
Linux poorman 2.4.18-17.7.xsmp #1 SMP Tue Oct 8 12:37:04 EDT 2002 i686 unknown
RH 7.3, on a 1.7Ghz Pentium
./configure --prefix=/contrib/R-1.7.0 >& configure.attempt.1
r...
2006 Mar 10
2
problem building R-patched on x86-64 with PGI 6.1
...1] -2.220446e-16 -4.440892e-16 -8.881784e-16 -8.881784e-16
whereas the build with the -Kieee flag gives:
> pretty(pi, n = 10) - 2:5
[1] 0 0 0 0
and can pass the arith-true.R test.
The configuration is as follows:
export PG_HOME=/usr/pgi/linux86-64/6.1
~/Rbuild/R-patched/configure \
CC=pgcc \
CFLAGS="-g -Kieee" \
CPPFLAGS="-I$PG_HOME/include -I$PG_HOME/include/CC" \
CPICFLAGS=-fpic \
F77=pgf95 \
FFLAGS="-g -Kieee"\
FPICFLAGS=-fpic \
CXX=pgCC \
CXXFLAGS="-g -Kieee" \
CXXPICFLAGS=-fpic \
SHLIB_CXXL...
2004 Apr 03
0
problem compiling R-1.9.0beta with PGI compilers on amd6 4
...University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
I have a bit of success. I can build R with pgf77/gcc/g++, and it passes
make check. Will keep trying with pgcc/pgCC, and maybe compare timing,
if/when I find the time.
Best,
Andy
------------------------------------------------------------------------------
Notice: This e-mail message, together with any attachments,...{{dropped}}
2004 Apr 05
0
speed difference between pgf77 and g77 on amd64
....0-GCC/bin/R --slave -q
used (Mb) gc trigger (Mb)
Ncells 431805 23.1 741108 39.6
Vcells 50125266 382.5 150395933 1147.5
[1] 777.55 0.40 882.37 0.00 0.00
I'd welcome comments and suggestions on code for further comparison. I will
also keep trying to compile R with pgcc/pgCC and see if further gain is
possible.
Best,
Andy
--
Andy Liaw, PhD
Biometrics Research PO Box 2000, RY33-300
Merck Research Labs Rahway, NJ 07065
mailto:andy_liaw@merck.com 732-594-0820
2005 Sep 02
0
Build R with ATLAS
...tat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to
convert static libraries to dynamic libraries.
However, when I tried to configure R-devel, I got the following error
messages in config.log:
configure:33172: checking for sgemm_ in -lf77blas
configure:33210: /usr/pgi/linux86-64/6.0/bin/pgcc -o conftest -g -O2
-mieee-fp -I/usr/pgi/linux86-64/6.0/include -I/usr/pgi/l\
inux86-64/6.0/include/CC -L/usr/pgi/linux86-64/6.0/libso -L/usr/lib64
-L/usr/local/lib64 conftest.c -lf77blas -latlas -lpgftn\
rtl -lnspgc -lpgc -lm -ldl -lm >&5
pgcc-Warning-Unknown switch: -mieee-fp
NOTE: you...
2005 Sep 06
1
Build R with AMD pgi compiled ACML library
Hi,
Has anyone had any luck in using portland group compiler to build
R(-devel) with AMD's pgi compiled ACML library? I've downloaded the
packages and set LD_LIBRARY_PATH, and run configuration script as follow:
% ./configure --prefix=/usr/local/R.pgcc --with-blas='-lacml'
However, it failed to pick up double complex BLAS,
checking for sgemm_ in -lacml... yes
checking whether double complex BLAS can be used... no
Can anyone advise me on how to fix this problem?
Thank you in advance for your help!
Sincerely,
Jennifer
2009 Feb 11
1
Problem with R using pgi compiler on x86_64
Hi,
we have installed R-2.8.1 using the current pgi compiler (8.0.2) for
AMD64 on a SLES9 system.
When I try to install "Matrix" everything is fine until the last step.
make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD'
pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so
CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o
chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o
dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o
dtTMatrix.o dtrMatrix.o dtpMatr...
2012 Feb 28
0
[LLVMdev] inspecting value of formal parameter in gdb for x86
...foo:c <- ESP+4294967295
popl %esi # argpass.c:10:1
popl %ebp # argpass.c:10:1
ret # argpass.c:10:1
...
'c' parameter is indeed stored in location 8(%ebp).
If I use a different compiler (PGI C compiler):
pgcc -tp=k8-32 -O2 -g -c argpass.c
I've got following DWARF information for 'c' parameter:
...
<2><68>: Abbrev Number: 3 (DW_TAG_formal_parameter)
<69> DW_AT_name : c
<6b> DW_AT_start_scope : 0x3
<6f> DW_AT_type : <0x77>...
1999 Nov 11
6
Compilation of R under Mandrake Linux 6.1 (helios)
I've just installed Mandrake Linux, then compiled R-0.65.1 .
Whether because I omitted some necessary items when I selected
software for installion, or because they anyway needed to be
loaded afterwards, I found it necessary to load the following
packages in order to compile R-0.65.1
pgcc-g77-1.1.3-3mdk.i586.rpm (Fortran g77 compiler)
XFree66-devel-3.3.5-3mdk.i586.rpm (X.h etc header files)
In addition I had the problem which Jack Fenner (jnf@pcisys.net;
6 Sep 1999 message) noted for installation under Caldera Linux 2.2,
i. e. /usr/X11R6/lib/libX11.so.6.1 was not getting...
2001 Feb 17
1
More comments on R-1.2.1 builds (PR#852)
...----------^
% gcc -c boo.c
% lcc -A -A -c boo.c
boo.c:9: `Fruit' is an illegal bit-field type
% cxx -c boo.c
% g++ -c boo.c
On GNU/Linux (Redhat 6.2) on Intel x86:
% cc -c boo.c
% gcc -c boo.c
% lcc -A -A -c boo.c
boo.c:9: `Fruit' is an illegal bit-field type
% g++ -c boo.c
% pgcc -c boo.c
% pgCC -c boo.c
On IBM RS/6000 AIX 4.3:
% cc -c boo.c
"boo.c", line 9.11: 1506-159 (E) Bit-field type specified for x is not valid. Type unsigned assumed.
% gcc -c boo.c
CC -c boo.c
% CC -c boo.c
% g++ -c boo.c
% c89 -c boo.c
"boo.c", line 9.11: 1506-009 (S) B...
1998 Aug 27
0
precompiled SCO binaries u
...s.
to>
to> Tony Nichols
The WEB page is at
http://www.oronline.net/utenti/teknosoft/Docs/Samba.htm.
In this page you can download a 1.9.18p8 version and shortly 1.9.18p10 for
SCO5. I've added some compiler options for Pentium optimizations and I'm
thinking to compile a version with a pgcc. The compiler is gcc 2.7.2.1.
Here is a snip of Makefile.
# Add any optimisation or debugging flags here
# add -DSYSLOG for syslog support
# FLAGS1 = -O3 -K pentium,noframe
FLAGS1 = -melf -m486 -O2 -malign-loops=4 -malign-jumps=4
-malign-functions=4
LIBS1 =
# Use this for SCO OpenServer 5 with...