search for: penel

...-I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -std=gnu99 -c plot3d.c -o plot3d.o /usr/ccs/bin/as: "/tmp/ccYv732b.s", line 7057: error: constant value must be between -4096 and 4095 make[3]: *** [plot3d.o] Error 1 make[3]: Leaving directory `/bge/penel/R-devel/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/bge/penel/R-devel/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/bge/penel/R-devel/src' make: *** [R] Error 1 I did not found any report about this problem in the R-devel archives . Should I wait...

...I am working on an unix SunOS machine ( sun4u sparc) and since the last release of R -R version 2.5.0 (2007-04-23) - , I have got troubles during the execution of batch command. For example with the instruction file multic.in >cat multic.in install.packages("multic","/bge/penel/R_install/R_2.5.0/lib/R/library",repos="http://cran.at.r-project.org") When I use the BATCH command, I get an error : >R_2.5.0/bin/R CMD BATCH multic.in creates the multic.in.Rout file : >cat multic.in.Rout Error in Sys.unsetenv("R_BATCH") : 'Sys.unsetenv...

...odifylist(), getlistate(), setlistname(), residuecount(), isenum(), prettyseq(), gfrag(), print.seqAcnucWeb() o Utility function parser.socket() has been optimized and is about four times faster now. This decreases the time needed by the query() function. Best, the seqinR team -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://lbbe.univ-lyon1.fr/-Penel-Simon-.html?lang=fr http://pbil.univ-lyo...

...odifylist(), getlistate(), setlistname(), residuecount(), isenum(), prettyseq(), gfrag(), print.seqAcnucWeb() o Utility function parser.socket() has been optimized and is about four times faster now. This decreases the time needed by the query() function. Best, the seqinR team -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://lbbe.univ-lyon1.fr/-Penel-Simon-.html?lang=fr http://pbil.univ-lyo...

...Rconnection.h ? It seems to me that I may finally have to write a modified version of the C function readLines, but I think this not the best solution. This my second question.... I hope this mail is not irrelevant, thanks for any help about these questions All the best, Simon -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel

...o The function kaks() now forces character in sequences to upper case. This default behavior can be neutralized in order to save time by setting the argument forceUpperCase to FALSE. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/kaks.html all the best, Simon -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel _____________________________...

...o The function kaks() now forces character in sequences to upper case. This default behavior can be neutralized in order to save time by setting the argument forceUpperCase to FALSE. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/kaks.html all the best, Simon -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel _____________________________...

...des counts are now possible. Thanks to Gabriel Valiente for this suggestion. The functions zscore(), rho() and summary.SeqFastadna() have also an argument alphabet which is forwarded to count(). Best, the seqinR team http://pbil.univ-lyon1.fr/software/SeqinR/seqinr_accueil.php -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel _____________________________...

...des counts are now possible. Thanks to Gabriel Valiente for this suggestion. The functions zscore(), rho() and summary.SeqFastadna() have also an argument alphabet which is forwarded to count(). Best, the seqinR team http://pbil.univ-lyon1.fr/software/SeqinR/seqinr_accueil.php -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel _____________________________...

...n/seqinr_in2p3/seqinr/src/test.o': /home/simon/seqinr_in2p3/seqinr/src/test.o: undefined symbol: getConnection > Finally I tried as well on Windows and the function "getConnection" was not found at the compilation step..... Thanks very much for any help!! Simon -- Simon Penel Laboratoire de Biometrie et Biologie Evolutive Bat 711 - CNRS UMR 5558 - Universite Lyon 1 43 bd du 11 novembre 1918 69622 Villeurbanne Cedex Tel: 04 72 43 29 04 Fax: 04 72 43 13 88 http://pbil.univ-lyon1.fr/members/penel

The version of R on our unix system has been updated to version 2.5.0. When I type the following command at the unix prompt: 'R CMD BATCH filename' I receive the following error message: Error in Sys.unsetenv("R_BATCH") : 'Sys.unsetenv' is not available on this system Execution halted. 'R CMD BATCH filename' used to work with the prior version of R that I

...456,73.280,73.564,73.921) Vb <- c(18.020,17.822,17.480,16.897,16.277,13.833,13.101) plot(c(0,1), c(10,80), type="n", xlab=expression(x[aceton]), ylab="Partielt molart volum", bty="o", xaxs="i", yaxs="i", xaxp=c(0,1,10), yaxp=c(10,80,20), penel.first = grid(20,20,lty=1) ) points(xA[2:7],Va[2:7], type="o", col="blue",pch=5,lend=1) points(xA[1:6],Vb[1:6], type="o", col="darkgreen",pch=5) arrows(xA[2],Va[2],xA[1],Va[1],col="blue") arrows(xA[6],Vb[6],xA[7],Vb[7],col="darkgreen")

To Whom It May Concern: I need to use various packages in R and I also want to use Textmate. Problem 1: Textmate doesn't seem to recognize the packages that are already installed on R. Problem 2: When I execute the following command: install.packages("ade4", repos="http://cran.r-project.org", contriburl = contrib.url(