Displaying 3 results from an estimated 3 matches for "pedigreemm".
2013 Mar 11
4
Pedigreemm
Hola a todos, me gustaría realizar una consulta asociada a la generación
de valores genéticos del pedigreemm en R. Primero generé el archivo de
pedigree incluyendo los parentales para posteriormente estimar la varianza
aditiva y los valores genéticos para cada individuo, relacionando los
individuos por medio de la matriz de parentesco.
Me da todo perfecto, el complemento pedigreemm trabaja muy bien, p...
2013 Jun 03
1
Mixed effects model with a phylogenetic tree/ distance matrix as a random effect
Hi,
I'm trying to build a mixed-effects model in which I'd like to include
either a distance matrix or a phylogenetic tree as a random effect.
The troubles I've had are that:
1. Function lmer() in package lme4 only accepts a data frame column as a
random factor and not a distance matrix.
2. Function MCMCglmm() in package MCMCglmm only accepts a rooted and
ultrametric phylogenetic
2010 Aug 25
1
Documenting S4 Methods
I'm in the process of converting some S3 methods to S4 methods.
I have this function :
setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")})
setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) {
... ... ...
})