search for: pedigreelist

...under R CMD check. The paricular line of failure is rsum <- rowSums(kmat>0) where kmat is a dsCMatrix object. I'm currently stumped and looking for some ideas. I've created a stripped down library "ktest" that has only 3 functions: pedigree.R to create a pedigree or pedigreeList object, kinship.R with "kinship" methods for the two objects one small compute function called by the others along with the minimal amount of other information such that a call to R --vanilla CMD check ktest gives no errors until the fatal one. There are two test cases. A...

Dear useRs: Announcing the release of kinship2, version 1.2.1, to CRAN. kinship2 is a branch from the original kinship package with some key updates for the pedigree and kinship functions, with some additional functions that work with the pedigree object. Highlights: * pedigree and pedigreeList objects implemented with S3 methods print and "[," * pedigree plotting routine re-written, now more robust * kinship matrices now implemented with Matrix package classes * utilities to trim the pedigree object with various criteria A vignette is available with vignette("pedigree&...

Dear useRs: Announcing the release of kinship2, version 1.2.1, to CRAN. kinship2 is a branch from the original kinship package with some key updates for the pedigree and kinship functions, with some additional functions that work with the pedigree object. Highlights: * pedigree and pedigreeList objects implemented with S3 methods print and "[," * pedigree plotting routine re-written, now more robust * kinship matrices now implemented with Matrix package classes * utilities to trim the pedigree object with various criteria A vignette is available with vignette("pedigree&...