Displaying 1 result from an estimated 1 matches for "peakswithsequences".
2011 Sep 21
4
chippeakanno package: "getAllPeakSequence" problem
Hi all,
I am using the package ChIPpeakAnno, and I have a problem with the function
getAllPeakSequence. This is related to object oriented programming I think,
I have the following message:
> peaksWithSequences <- getAllPeakSequence(peakList, upstream = 100,
> downstream = 100, genome = Hsapiens)
Error in validObject(.Object) :
invalid class "GRanges" object: superclass "Sequence" not defined in the
environment of the object's class
Is the error coming from my configurat...