search for: pcalg

Hi all, Can anyone help me setup this package so I can use it. I am getting errors with the Rgraphviz package and have tried a number of ways to get this to work. Any help will be greatly appreciated! I am sorta new to R but have been actively trying to get into using it as my main analysis software. Thanks, Brock [[alternative HTML version deleted]]

The R package "pcalg" is released. The main purpose of this package is to estimate the skeleton of a DAG given data sampled from a distribution corresponding to this DAG. More intuitively, you can search for "strong dependencies" in potentially high dimensional data sets. The result will be an undirect...

The R package "pcalg" is released. The main purpose of this package is to estimate the skeleton of a DAG given data sampled from a distribution corresponding to this DAG. More intuitively, you can search for "strong dependencies" in potentially high dimensional data sets. The result will be an undirect...

...o install, t(combn(set,2)) was suggested but it doesn't produce repetitions; expand.grid(rep(list(1:3), 2)) was also suggested, but it produces permuations, not combinations. Additionally, I would like to iterate through each resultant set for large n (similar to the description for getNextSet {pcalg}). Any suggestions? Reuben Cummings

It would be nice if the 00check.log file also included this part of the output: Running ?bladder.R? Comparing ?bladder.Rout? to ?bladder.Rout.save? ... OK Running ?book1.R? Comparing ?book1.Rout? to ?book1.Rout.save? ... OK Running ?book2.R? Comparing ?book2.Rout? to ?book2.Rout.save? ... OK etc. The survival package has enough test scripts that it exceeds my terminal's scroll

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...(0.6-2), impute (1.18.0), integrOmics (2.4), klaR (0.6-0), languageR (0.955), mboost (1.1-3), mcmc (0.7-2), mefa (3.1-2), mhsmm (0.3.1), MLCM (0.0-3), MNP (2.6-1), modTempEff (1.1), mstate (0.2.2), NeatMap (0.3.1), nFactors (2.3), nplplot (4.4), OAIHarvester (0.0-6), OjaNP (0.9-3), party (0.9-999), pcalg (0.1-9), phmm (0.6.1), plm (1.2-0), pomp (0.25-4), QCA (0.6-2), qpcR (1.2-2), R.huge (0.1.9), RcmdrPlugin.DoE (0.5-2), RQDA (0.1-8), sdtoolkit (2.31), sgeostat (1.0-23), sqldf (0-1.7), stringkernels (0.8.7), survey (3.18), tripack (1.3-4), YourCast (1.1-3) New reviews ----------- * yaml, by bjor...

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):

...-6), ordinal (2010.06-12), orloca (3.2), orloca.es (3.2), oro.dicom (0.2.6), oro.nifti (0.2.0), ouch (2.6-2), paleoTS (0.3-2), pamm (0.7), pamr (1.47), panel (1.0.7), paran (1.4.3), parser (0.0-10), partDSA (0.7.1), partitions (1.9-8), party (0.9-9997), PBSmapping (2.61.9), PBSmodelling (2.61.210), pcalg (1.0-2), pcaPP (1.8-1), pedigree (1.3.1), pegas (0.3-2), penalized (0.9-31), pendensity (0.2.3), pgfSweave (1.0.5), pgirmess (1.4.6), phangorn (1.0-2), phyclust (0.1-7), picante (1.1-1), playwith (0.9-52), plink (1.2-3), plm (1.2-4), plotrix (2.9-5), plsdof (0.2-1), plspm (0.1-6), plyr (1.0.3), pmm...