search for: pbatr

On Fedora Core Linux 4, I have a cron job that causes R to update all packages and install new ones. Lately, I notice in the log that some packages fail to install. These are ones that assume X is running. For example, the pbatR install requires tcltk to be loaded, and then the install fails because in a cron job, there is no DISPLAY environment. I suppose the same happens if you try to install R packages in the console, without X running? Error output is pasted here. I wonder if you can advise me whether this is the ki...

On Fedora Core Linux 4, I have a cron job that causes R to update all packages and install new ones. Lately, I notice in the log that some packages fail to install. These are ones that assume X is running. For example, the pbatR install requires tcltk to be loaded, and then the install fails because in a cron job, there is no DISPLAY environment. I suppose the same happens if you try to install R packages in the console, without X running? Error output is pasted here. I wonder if you can advise me whether this is the ki...

Dear All, Does anybody have experience with R package pbatR (http://cran.r-project.org/web/packages/pbatR/index.html)? I am trying to use it to analyze the family-based case-control data, but the package totally doesn?t work on my computer. I contacted the authors of the package, but I haven?t heard anything from them. Following the package manual, I trie...

Hello folks, I am having a problem installing pbatR package. (My R version is 2.8.1.) As I execute a command > install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") it detects lack of rootSolve package and attempts to install it. But cannot seem to compile it, and the rest is aborted. Any hint as to wh...

In trying to install the pbatR package, I was greeted with the error Error: package 'tcltk' does not have a name space Execution halted Directly installing the package tcltk2 returned the following error: Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not availabl...

...th-tcltk --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh Is there a dep for R 2.2.1 on a specific version of tcl? Any hints on this issue appreciated. running on linux (2.4.21-4) version: rpm -qa | grep tcl tcl-devel-8.3.5-92 tcl-8.3.5-92 Specifically, the package pbatR loads this library during installation. Thanks, Patrice -- Patrice Seyed Linux System Administrator - LinGA RHCE, SCSA Boston University Medical Campus

Hello, I am having really hard time finding a good article about simulating genotypes of cases and controls at a disease locus using R. if you guys can point me or guide me where i can find more information, it will be helpful. thanks, Claire -- View this message in context: http://www.nabble.com/genotypes-simulation-tp17065607p17065607.html Sent from the R help mailing list archive at

...>> >> Is there a dep for R 2.2.1 on a specific version of tcl? Any hints on >> this issue appreciated. >> >> running on linux (2.4.21-4) version: >> rpm -qa | grep tcl >> tcl-devel-8.3.5-92 >> tcl-8.3.5-92 >> >> Specifically, the package pbatR loads this library during installation. >> >> Thanks, >> Patrice >> -- Patrice Seyed Linux System Administrator - LinGA RHCE, SCSA Boston University Medical Campus -- Patrice Seyed Linux System Administrator - LinGA RHCE, SCSA Boston University Medical Campus

....) 1) One common error message is An integer constant expression is required within the array subscript operator. Here is an example: double data[(*nrow)+2*env][(*ncol)+2*env]; This affects at least packages GammaTest MCMCpack MasterBayes clusterSim dprep edci epsi knnFinder pbatR rmetasim zicounts 2) Including C header files is fraught with difficulties. Unfortunately that includes the R header files, because they in turn include system C headers. The checking of which features were available was done using the C compiler with particular flags, and glibc has a habit...

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