Displaying 1 result from an estimated 1 matches for "pattern_fct".
2010 Aug 08
2
Importing arguments for use by functions in a script
...ave a series of interdependent functions. I wish to test the time for
processing various datasets.
I was initially doing something along the lines of the following (yes, I am
new to R):
rm(list= ls())
systime1<-system.time(source("seq_imp_fct.R"))
systime2<-system.time(source("pattern_fct.R"))
systime3<-system.time(source("AAdistribution_fct.R"))
# run function
systime101<-system.time(seqres<-seq_imp_fct("testprot.txt"))
systime102<-system.time(patres<-pattern_fct(pattern="SS{1,2}",sequences=seqres))
systime103<-system.time(AAres...