search for: paper2

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2012 Mar 30
3
pooling in MICE
Hi everyone, Does anyone here has experience using MICE to impute missing value? I am having problem to pool the imputed dataset for a MANOVA test, could you give me some advice please? Here is my code: > library(mice) > grd3dat=subset(paper2,Control==1&Grade_1==3,select=c(Boy,BVCategoryT1,reclassify,meanseap_1,meandep_1,meananx_1,meanper_1,meanrelma_1,meandiff_1,meanascon_1,meanclasc_1,meanschoc_1)) > grd3imp=mice(grd3dat,m=20,seed=123,print=F) > grd3mod=with(grd3imp,lm(cbind(meanseap_1,meandep_1,meananx_1)~Boy*BVCategoryT1...
2005 Oct 25
0
Software caused connection abort
...hell and I use the following command in the Cygwin shell: $ rsync --delete -avz pubpapers //nas/Winmarra/pcbackup/. The process starts correctly then after a while it hangs with the following output: building file list ... done deleting pubpapers/incoming/paper1.pdf deleting pubpapers/incoming/paper2.pdf ... (a long list) ... pubpapers/ pubpapers/flame.bak pubpapers/flame.bib rsync: writefd_unbuffered failed to write 10609 bytes: phase "unknown" [sender]: Software caused connection abort (113) rsync: write failed on "/nas/Winmarra/pcbackup/./pubpapers/flame.bak": No such...
2008 Dec 05
0
R] adding a new dataset to the default R distribution
...ult, there is every reason for the data to be part of that publication. The Gentleman and Lang 2004 paper "Statistical Analyses and Reproducible Research" takes this further still, making a compelling case for opening the analysis to ready view. (http://www.bepress.com/bioconductor/paper2/ ) How else can critics know what analysis was done, and whether the data do really support the claimed conclusions? As I see it, the first recourse should be use of archives that individual communities may establish. Instructions on how to input the data into R would be a useful small it...
2013 Mar 04
4
enabling reproducible research & R package management & install.package.version & BiocLite
Hi, In support of reproducible research at my Institute, I seek an approach to re-creating the R environments in which an analysis has been conducted. By which I mean, the exact version of R and the exact version of all packages used in a particular R session. I am seeking comments/criticism of this as a goal, and of the following outline of an approach: === When all the steps to an workflow